View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_27 (Length: 496)
Name: NF16091_high_27
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 35816647 - 35817111
Alignment:
| Q |
1 |
actactacatataaaacaaagacccccttatgccactgtcgtgcttccaagctctcaatttcctgccatgcgattctaggatcatgggtttacaggatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816647 |
actactacatataaaacaaagacccccttatgccactgtcgtgcttccaagctctcaatttcctgccatgcgattctaggatcatgggtttacaggatta |
35816746 |
T |
|
| Q |
101 |
gtcggtctttatctatctgtgttttgagtagcttattttgcaacgagaaaacttgnnnnnnnnn-gtcagctttcaaagggttgtattttgaaaattaac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
35816747 |
gtcggtctttatctatctgtgttttgagtagcttattttgcaacgagaaaacttgttttttttttgtcagctttcgaagggttgtattttgaaaattaac |
35816846 |
T |
|
| Q |
200 |
tgcccaagaaaagagctttcagccaaatgaatgtggttataagctcagtaggttacaagcaacatggcaaattttcccttattatttgtaagtgttacat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35816847 |
tgcccaagaaaagagctttcagccaaatgaatgtggttataagc----------------aacatggcaaattttcccttattatttgtaagtgttacat |
35816930 |
T |
|
| Q |
300 |
gctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcatttccttgtgggaaagaggacgtaatgatgaaacccaattcaccc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35816931 |
gctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcatttccttgtgggaaagaggacgtaatgatgaaacccaattcaccc |
35817030 |
T |
|
| Q |
400 |
agctgttgcaacgccaacatgcacaaggtcaaattcattaaatataatgtgaaccaatgccaagtagttgagatttgagaa |
480 |
Q |
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| T |
35817031 |
agctgttgcaacgccaacatgcacaaggtcaaattcattaaatataatgtgaaccaatgccaagtagttgagatttgagaa |
35817111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 36744489 - 36744566
Alignment:
| Q |
278 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcat |
355 |
Q |
| |
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||||||||||||||||||||||||||||||| | |||||| |||||||||||||| | ||| |||||||||||| |
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| T |
36744489 |
ttattatttgtaagtgttacatgctgccacaatggattcttaagtttcttgtcaaacttctctcgtaacaataagcat |
36744566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 15533559 - 15533638
Alignment:
| Q |
278 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcattt |
357 |
Q |
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|||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| | |||| |||||||| ||||| |
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| T |
15533559 |
ttataatttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaacttctctcataacaataaccattt |
15533638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 15517053 - 15517127
Alignment:
| Q |
283 |
atttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaacacccctcacaacaataagcattt |
357 |
Q |
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| T |
15517053 |
atttgtaagtgttgcatgctgccacataagattcttgtgtttcttgtcaaatttctctcataacaataagcattt |
15517127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 23693169 - 23693118
Alignment:
| Q |
278 |
ttattatttgtaagtgttacatgctgccacatagaattcttgcgtttcttgt |
329 |
Q |
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|||||||||| ||| |||||||| |||||||||| ||||||||||||||||| |
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| T |
23693169 |
ttattatttgaaagagttacatggtgccacataggattcttgcgtttcttgt |
23693118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 8459064 - 8459014
Alignment:
| Q |
283 |
atttgtaagtgttacatgctgccacatagaattcttgcgtttcttgtcaaa |
333 |
Q |
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|||||| ||||||||||||| |||||||||||| ||| ||||||| ||||| |
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| T |
8459064 |
atttgtgagtgttacatgctaccacatagaatttttgtgtttcttatcaaa |
8459014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 8003947 - 8003907
Alignment:
| Q |
278 |
ttattatttgtaagtgttacatgctgccacatagaattctt |
318 |
Q |
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|||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
8003947 |
ttattatttgaaagagttacatgttgccacatagaattctt |
8003907 |
T |
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