View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_29 (Length: 490)
Name: NF16091_high_29
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 470
Target Start/End: Original strand, 41255134 - 41255614
Alignment:
| Q |
7 |
gtcacatatgcaggaaactgattatattacctcttgggttcttattaaacttaatcacgaccctataagacctactaatagcatcaaagtccatttagac |
106 |
Q |
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| T |
41255134 |
gtcacatatgtaggaaactgattatattacctcttgggttcttattaaacttaatcacaaccctataagacctactaatagcatcaaagtccatttagac |
41255233 |
T |
|
| Q |
107 |
ttgatagtcacgttcaaccatcaacaactggtttcaattatgcatcaaatgatttcaaagttagatgattgtaatgcagctaatatgcaaatattttcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41255234 |
ttgatagtcacgttcaaccatcaacaactggtttcaattatgcatcaaatgatttcaaagttagatgattgtaatgcagctaatatgcaaatattttcaa |
41255333 |
T |
|
| Q |
207 |
taagggctataacattctttttaacctatatagacttggtagcctcgttcaaccgtcaatcaattcagttgtcagtcgattcacaccat----------- |
295 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41255334 |
taagggttataacattctttttaacctatatagacttggtagtctcgttcaaccgtcaatcaattcagatgtcagtcgattcacaccatcaacttattcc |
41255433 |
T |
|
| Q |
296 |
-----caactagttgtgacgaagctgatatgcagataactctttttcagtctaatcgccaatacatgatttgaatacttatatttttgtgtaaacatcgt |
390 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41255434 |
aacgccaactaattgtgacgaagctgatatgcagataactctttttcagtctaatcgccaatacatgatttgaatacttatatttttgtgtaaacatcgt |
41255533 |
T |
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| Q |
391 |
ctaataatgctat-tgtttaactatttatgacaaatactttttgtttaacttaaaatgttgattaaatgtaattttaaatt |
470 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41255534 |
ctaataatgctatatgtttaactatttatgacaaatactttttgtttaacttaaaatgttgattaaatgtaattttaaatt |
41255614 |
T |
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