View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_33 (Length: 473)
Name: NF16091_high_33
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 43604846 - 43604404
Alignment:
| Q |
18 |
cactcaatacattattacggctgagcctagcaactgaaacttgtattgatggaaggcatgggttgctggctataccttgtcctgaagcctataaggccct |
117 |
Q |
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| T |
43604846 |
cactcaatacattattacggctgagcctagcaactgaaacttgtattgatggaaggcatgggttgctggctataccttgtcctgaagcctatgaggccct |
43604747 |
T |
|
| Q |
118 |
taaagaacggtggaataatttgctttgttaaaatgtaaaatatgcacatttcattaggtactgtagaaacaacctttaagatttacccaataaaggcact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604746 |
taaagaacggtggaataatttgctttgttaaaatgtaaaatatgcacatttcattaggtactgtagaaacaacctttaagatttacccaataaaggcact |
43604647 |
T |
|
| Q |
218 |
atatggtacataatcccatcatcgcacccggtaattgttctgtatatagacgagtctaggcactattcatactacaccttgtgttgatgtatagaacaaa |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604646 |
atatggtacataatcccatcatcgcacccagtaattgttctgtatatagacgagtctaggcactattcatactacaccttgtgttgatgtatagaacaaa |
43604547 |
T |
|
| Q |
318 |
gtatagacctttatcaaatatacaaagcttgattaacagcttctgaattcattccaattgcatcagttaaaattagatttagattagttatgatcagtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604546 |
gtatagacctttatcaaatatacaaagcttgattaacagcttctgaattcattccaattgcatcagttaaaattagatttagattagttatgatcagtta |
43604447 |
T |
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| Q |
418 |
tgcatgtttttctactaattaattcagttgaattccctttgct |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604446 |
tgcatgtttttctactaattaattcagttgaattccctttgct |
43604404 |
T |
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