View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_36 (Length: 458)

Name: NF16091_high_36
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_36
NF16091_high_36
[»] chr6 (11 HSPs)
chr6 (18-304)||(11170954-11171240)
chr6 (19-242)||(11276339-11276562)
chr6 (18-254)||(11209776-11210012)
chr6 (18-237)||(11197107-11197326)
chr6 (18-257)||(11156654-11156895)
chr6 (18-237)||(11241005-11241230)
chr6 (18-136)||(11161533-11161651)
chr6 (18-136)||(11200276-11200394)
chr6 (18-233)||(11133378-11133593)
chr6 (374-444)||(11171312-11171382)
chr6 (391-436)||(8382104-8382149)
[»] scaffold1207 (1 HSPs)
scaffold1207 (18-303)||(1269-1538)
[»] scaffold0734 (2 HSPs)
scaffold0734 (383-437)||(1908-1962)
scaffold0734 (200-254)||(6714-6770)
[»] chr7 (7 HSPs)
chr7 (378-437)||(2407345-2407404)
chr7 (391-437)||(7875716-7875762)
chr7 (377-437)||(40352657-40352717)
chr7 (62-170)||(8647305-8647410)
chr7 (391-433)||(41415672-41415714)
chr7 (119-228)||(3147757-3147866)
chr7 (111-181)||(8640170-8640237)
[»] chr5 (1 HSPs)
chr5 (391-435)||(5003527-5003571)
[»] chr1 (2 HSPs)
chr1 (111-169)||(15595516-15595571)
chr1 (392-437)||(33096059-33096104)
[»] chr8 (1 HSPs)
chr8 (391-437)||(18896459-18896505)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 11170954 - 11171240
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    ||||||||| | | ||| |||||||||  ||||||  |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  11170954 gatccaaggaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaa 11171053  T
Q  118 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11171054 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcct 11171153  T
Q  218 ctttgcatctacaaaacaaaagagagttgtgtacactatgnnnnnnnnttggatcgctttatgaattaatcattctatgtggatttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  11171154 ctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaacaattggatcgctttatgaattaatcattctatgtggatttg 11171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 11276339 - 11276562
Alignment:
Q  19 atccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaac 118  Q
    |||||||| | ||||| |||||||||  |||||| ||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  11276339 atccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagttaacaac 11276438  T
Q  119 aatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  11276439 aatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaattagcctc 11276538  T
Q  219 tttgcatctacaaaacaaaagaga 242  Q
    ||||||||||||||||||||||||    
T  11276539 tttgcatctacaaaacaaaagaga 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 11209776 - 11210012
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    ||||||||| | ||||| ||| ||||   |||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  11209776 gatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaa 11209875  T
Q  118 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcct 217  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  11209876 caatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaaaatttccgaccaattagcct 11209975  T
Q  218 ctttgcatctacaaaacaaaagagagttgtgtacact 254  Q
    |||||||||||||||||||||||||||||||||||||    
T  11209976 ctttgcatctacaaaacaaaagagagttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 11197107 - 11197326
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11197107 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 11197206  T
Q  118 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcct 217  Q
    ||||||||||||||||||| ||||| |||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| ||||||||||||    
T  11197207 caatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcct 11197306  T
Q  218 ctttgcatctacaaaacaaa 237  Q
    ||||||||||||||||||||    
T  11197307 ctttgcatctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 11156654 - 11156895
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  11156654 gatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaa 11156753  T
Q  118 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcct 217  Q
    ||||||||||||||||||| ||||  |||||||||||||| |||||| |||||| |||||||||||| || |  |||||||| |||| ||||||||||||    
T  11156754 caatcatgggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaattagcct 11156853  T
Q  218 ctttgcatctacaaaacaa--aagagagttgtgtacactatg 257  Q
    |||||||||||||||||||  || ||||||| ||||||||||    
T  11156854 ctttgcatctacaaaacaaacaaaagagttgagtacactatg 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 11241230 - 11241005
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  11241230 gatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagttaacaa 11241131  T
Q  118 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgca------aaatttccgaccaat 211  Q
     | ||||| |||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||  ||||| || ||      ||| |||| ||||||    
T  11241130 tagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttcctaccaat 11241031  T
Q  212 tagcctctttgcatctacaaaacaaa 237  Q
    ||||||||||||||||||||||||||    
T  11241030 tagcctctttgcatctacaaaacaaa 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 11161533 - 11161651
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  11161533 gatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaa 11161632  T
Q  118 caatcatgggtttgtcatt 136  Q
    |||||||||||||||||||    
T  11161633 caatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 11200276 - 11200394
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  11200276 gatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaa 11200375  T
Q  118 caatcatgggtttgtcatt 136  Q
    |||||||||||||||||||    
T  11200376 caatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 11133378 - 11133593
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    |||||||||||| |||| || |||||    ||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||  |||| || || ||||    
T  11133378 gatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaattgacaa 11133477  T
Q  118 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcct 217  Q
    ||||  ||||||||||||| | | ||||||||||||| ||||||||||| |||| |||||| || ||||| || || | |||||  | |||||| |||||    
T  11133478 caatattgggtttgtcatttatgccaccaattactttaaatggccacaatttcatatcactctgaactatagggtcactaaattctctaccaatgagcct 11133577  T
Q  218 ctttgcatctacaaaa 233  Q
    ||| ||||||||||||    
T  11133578 cttcgcatctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 374 - 444
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
Q  374 ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg 444  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11171312 ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg 11171382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
Q  391 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag 436  Q
    |||||||||  |||||| |||||| |||||||||||||||||||||    
T  8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaatcag 8382149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 1269 - 1538
Alignment:
Q  18 gatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 117  Q
    ||||||||| | ||||| ||| |||||  |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1269 gatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaa 1368  T
Q  118 caatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcct 217  Q
    ||||||||||||| |                   | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1369 caatcatgggtttatg------------------tatgaatggccacaacttcacatcactttctactatgggatcgcaaaatttccgaccaattagcct 1450  T
Q  218 ctttgcatctacaaaacaaaagagagttgtgtacactatg--nnnnnnnnttggatcgctttatgaattaatcattctatgtggattt 303  Q
    ||||||||||||||||||||||||||||||||||||||||          ||| ||||||||||| |||||||||| |||||||||||    
T  1451 ctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaaaacaattgtatcgctttatgtattaatcattttatgtggattt 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 1908 - 1962
Alignment:
Q  383 taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 437  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  1908 taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc 1962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 6714 - 6770
Alignment:
Q  200 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 254  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 437
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
Q  378 ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 437  Q
    |||| ||||||  ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  2407345 ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 2407404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
Q  391 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 437  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 7875762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
Q  377 accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 437  Q
    ||||| ||||||  ||||||||| |||||||||| | | ||||||||||||||||||||||    
T  40352657 accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc 40352717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 8647305 - 8647410
Alignment:
Q  62 catcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggc 161  Q
    ||||||||||||||| ||||||  | || |||| || ||  | || || ||||||| ||||||||||||||||||||   | ||||| || |||||||||    
T  8647305 catcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttgtcattca---ccccaatgaccttgaatggc 8647401  T
Q  162 cacaacttc 170  Q
    |||||||||    
T  8647402 cacaacttc 8647410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 433
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
Q  391 acaatcttgggattttggtcccttgtaaaaaacaataacaaat 433  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||    
T  41415672 acaatcttgcgattttggccccttataaaaaacaataacaaat 41415714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
Q  119 aatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctc 218  Q
    ||||||||||||||||||||   | | ||| || ||||||||||||||| ||| |||| |||| || |  | ||| | ||| |||| |||||||| ||||    
T  3147757 aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc 3147856  T
Q  219 tttgcatcta 228  Q
    ||||||||||    
T  3147857 tttgcatcta 3147866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 8640237 - 8640170
Alignment:
Q  111 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttg 181  Q
    ||||||| |||| |||||||||||||||   | ||||| || ||||||||||||||||||| |||| ||||    
T  8640237 ttaacaataatcgtgggtttgtcattca---ccccaatgaccttgaatggccacaacttcatatcattttg 8640170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
Q  391 acaatcttgggattttggtcccttgtaaaaaacaataacaaatca 435  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaatca 5003571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
Q  111 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt 169  Q
    ||||||| ||||||||||||||||||||   ||||||| || |||||||||||||||||    
T  15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
Q  392 caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 437  Q
    ||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  33096059 caatcttgcaattttggtcccttataaaaaataataacaaatcagc 33096104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
Q  391 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 437  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  18896459 acaatcttgcgattttggtcccctataaaaaacaataataaatcagc 18896505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University