View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_37 (Length: 452)
Name: NF16091_high_37
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 43108181 - 43107759
Alignment:
| Q |
10 |
agaagaattgattagtaagggactcgagccaaatggtaaggaatttaggtcctttaaacatgtgatcatgagttcgatctttaacttttatgtatggaga |
109 |
Q |
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| T |
43108181 |
agaagaattgattagtaagggactcgagccaagtggtaaggaatttaggtcctttaaacatgtgatcatgagttcgatctttaacttttacgtatgaaga |
43108082 |
T |
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| Q |
110 |
aaatctaattggaagaggagaacttacattgtatatccacaaattttaaaatgaatattaatcactactaaataatggggaaaatttcatatcaatacca |
209 |
Q |
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| T |
43108081 |
aaatctggttggaagaggagaacttacattgtatatccacaaatttttaaatgaatattaatcactactaaataatggggaaaatttcatatcaatacca |
43107982 |
T |
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| Q |
210 |
tggtnnnnnnnnnttagaattgattggaagcacttggagttgacctaagctttgaataatttatatacttgaataatctcaacaagttcacaattgcaag |
309 |
Q |
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| T |
43107981 |
tggtaaaaaaaaattagaattgattggaagcacttggagttgacctaagctttgaataatttatatacttgaataatctcaacaagttcacaattgcaag |
43107882 |
T |
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| Q |
310 |
tggaggtctacttaatcatcatataagcaagnnnnnnnngcaatgcaccattctcatcttagcacatcacatcacatagttcacataatcaaaacacatg |
409 |
Q |
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| T |
43107881 |
tggaggtctacttagtcatcatataagcaag-tttttttgcgatgctccattcacatcttag-----cacatcacatagttcacataatcaaaacacatg |
43107788 |
T |
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| Q |
410 |
aacataattcaccgattcacgttccattt |
438 |
Q |
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| T |
43107787 |
aacataattcaccgattcacgttccattt |
43107759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 19246371 - 19246308
Alignment:
| Q |
63 |
ttaaacatgtgatcatgagttcgatctttaacttttatgtatggagaaaatctaattggaagag |
126 |
Q |
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| T |
19246371 |
ttaaacaagtgatcatgagttcaatctcttacttttgtgtatcgagaaaatctatttgggagag |
19246308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 49942532 - 49942564
Alignment:
| Q |
41 |
aatggtaaggaatttaggtcctttaaacatgtg |
73 |
Q |
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| T |
49942532 |
aatggtaaggaatttgggtcctttaaacatgtg |
49942564 |
T |
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