View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_39 (Length: 441)

Name: NF16091_high_39
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_39
NF16091_high_39
[»] chr1 (3 HSPs)
chr1 (79-423)||(36505354-36505698)
chr1 (81-308)||(11079334-11079564)
chr1 (18-84)||(36509297-36509363)
[»] chr7 (8 HSPs)
chr7 (28-420)||(24564287-24564682)
chr7 (142-194)||(3962924-3962976)
chr7 (145-191)||(33336608-33336654)
chr7 (39-194)||(9360094-9360252)
chr7 (113-188)||(24268357-24268435)
chr7 (52-195)||(35826953-35827099)
chr7 (142-194)||(4595660-4595712)
chr7 (162-194)||(25611993-25612025)
[»] chr8 (4 HSPs)
chr8 (96-245)||(14220380-14220530)
chr8 (61-194)||(32283395-32283531)
chr8 (142-194)||(32577494-32577546)
chr8 (161-203)||(5839241-5839283)
[»] chr2 (5 HSPs)
chr2 (31-191)||(27177062-27177225)
chr2 (39-188)||(38452329-38452481)
chr2 (201-310)||(17296199-17296308)
chr2 (95-194)||(10213226-10213328)
chr2 (39-147)||(23797390-23797498)
[»] chr3 (2 HSPs)
chr3 (85-195)||(23483967-23484080)
chr3 (61-194)||(51192502-51192638)
[»] chr4 (3 HSPs)
chr4 (39-195)||(48445997-48446156)
chr4 (142-194)||(26429822-26429874)
chr4 (81-194)||(26006693-26006809)
[»] chr5 (4 HSPs)
chr5 (39-194)||(27453099-27453257)
chr5 (145-194)||(9610132-9610181)
chr5 (142-194)||(30797428-30797480)
chr5 (142-194)||(29242737-29242789)
[»] scaffold0004 (1 HSPs)
scaffold0004 (39-194)||(215816-215974)
[»] scaffold0607 (1 HSPs)
scaffold0607 (161-194)||(5145-5178)
[»] scaffold0016 (1 HSPs)
scaffold0016 (161-194)||(186602-186635)
[»] chr6 (2 HSPs)
chr6 (80-194)||(7436165-7436281)
chr6 (161-194)||(32956914-32956947)
[»] scaffold0200 (1 HSPs)
scaffold0200 (39-194)||(27568-27726)
[»] scaffold0011 (1 HSPs)
scaffold0011 (142-194)||(57856-57908)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 79 - 423
Target Start/End: Complemental strand, 36505698 - 36505354
Alignment:
Q  79 actgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatcagcaaaagcaagtctttggtgtgaccctttggagta 178  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36505698 actgttttcgatcttgatgcaagttttccgacaaatgtgttcgttattttacaacatcttgatcaacaaaagcaagtctttggtgtgaccctttggagta 36505599  T
Q  179 tttggaagcatagaaatgatatggtctaaaataatattattgaatcaactcaatctatttgtcaacgagcagattctctcttcactagctaggtgaatgt 278  Q
    ||| |||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  36505598 ttttgaagcataaaaatgatatgatctaaaataatattattgaattaactcaatctatttgtcaacgagcaggttatctcttcactagctaggtgaatgt 36505499  T
Q  279 ccaaaccatgcaaaaacatgctcctagacaatttaatagtcaaggcgagatatattggcaaaaaccaagtctcaggagatataaatgtaacatagatgtt 378  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |||||| |    
T  36505498 ccaaaccatgcaaaaacctgctcctagacaatttaatagtcaaggcgagatacattggcaaaaaccaagtctcgggaggtataaatgtaacgtagatgct 36505399  T
Q  379 tccttctctcatgcgttgaatatagttaggtttgacatgtgtgtc 423  Q
    |||||||| |||| |||||||| ||||||||||| ||||||||||    
T  36505398 tccttctcccatgtgttgaatagagttaggtttggcatgtgtgtc 36505354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 81 - 308
Target Start/End: Original strand, 11079334 - 11079564
Alignment:
Q  81 tgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgat---cagcaaaagcaagtctttggtgtgaccctttggagt 177  Q
    ||||||||||| ||||| |||||||| ||| |||||||| | ||||||||||||||| |||   || |||||| |||| |||||||||||||| ||||||    
T  11079334 tgttttcgatcatgatgtaagttttttgactaatgtgtttgctattttacaacatctagatcaacaacaaaagtaagtgtttggtgtgaccctctggagt 11079433  T
Q  178 atttggaagcatagaaatgatatggtctaaaataatattattgaatcaactcaatctatttgtcaacgagcagattctctcttcactagctaggtgaatg 277  Q
    |||||||| || || ||  | | || ||||||||||||| |||||||  |||| ||||||||| ||||   || ||| ||| ||||| | | | ||||||    
T  11079434 atttggaaacaaaggaacaacaaggcctaaaataatatttttgaatccgctcagtctatttgtgaacggaaagtttccctcctcacttgttggatgaatg 11079533  T
Q  278 tccaaaccatgcaaaaacatgctcctagaca 308  Q
     |||||||||| | || ||||||||||||||    
T  11079534 cccaaaccatgtacaatcatgctcctagaca 11079564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 36509363 - 36509297
Alignment:
Q  18 ctttttgggcagcaaaaatgtgatttattggcagcgcactggtttatggagtactctgatgactgtt 84  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36509363 ctttttgggcagcaaaaatgtgatttattggcagcgcactgatttatggagtactctgatgactgtt 36509297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 8e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 28 - 420
Target Start/End: Complemental strand, 24564682 - 24564287
Alignment:
Q  28 agcaaaaatgtgatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattt 127  Q
    ||||||| |||| ||| |||||| |||| ||   |||||||||||||||||||| ||||| ||| |||||||||||||||  |||||||||||  |||||    
T  24564682 agcaaaagtgtgctttgttggcaacgcattgacgtatggagtactctgatgactcttttcaatcctgatgcaagtttttcatcaaatgtgttcactattt 24564583  T
Q  128 tacaacatcttgatca---gcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaatgatatggtctaaaataatattattgaatc 224  Q
    ||||||||||||||||   |||||| ||| | |||||||| ||||||||||||||||||| |||||||||  ||| ||| | |||||||||| |||||||    
T  24564582 tacaacatcttgatcaatagcaaaatcaattatttggtgtaaccctttggagtatttggacgcatagaaacaataaggtttgaaataatattgttgaatc 24564483  T
Q  225 aactcaatctatttgtcaacgagcagattctctcttcactagctaggtgaatgtccaaaccatgcaaaaacatgctcctagacaatttaatagtcaaggc 324  Q
    |||||||||||||||  |||||||| ||| |||| ||||||| | | |||||| ||||||||||| ||||| ||||   ||||||||||| || ||        
T  24564482 aactcaatctatttgcgaacgagcatattatctcctcactagttggatgaatgcccaaaccatgcgaaaacttgctttgagacaatttaacagacacaat 24564383  T
Q  325 gagatatattggcaaaaaccaagtctcaggagatataaatgtaacatagatgtttccttctctcatgcgttgaatatagttaggtttgacatgtgt 420  Q
    |||||  ||| |||||||| |||||  ||||  |||||||| ||| || ||| ||||||||||  |||| |||||| |||| || |||||||||||    
T  24564382 gagatgcattagcaaaaactaagtcctaggaagtataaatgcaacgtaaatgcttccttctcttgtgcgctgaatagagttgggcttgacatgtgt 24564287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 3962976 - 3962924
Alignment:
Q  142 cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  3962976 cagcaaaagcaaatcttcagtgtgaccctttggagtatttggaagcatcgaaa 3962924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 33336654 - 33336608
Alignment:
Q  145 caaaagcaagtctttggtgtgaccctttggagtatttggaagcatag 191  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  33336654 caaaagcaagtttttggtgttaccctatggagtatttggaagcatag 33336608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 9360094 - 9360252
Alignment:
Q  39 gatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatctt 138  Q
    ||||| ||||||||| | ||| ||||| |||  | ||||| ||||||| ||| |||||||||| ||| | || |||||||| | ||| | | |||| |||    
T  9360094 gatttgttggcagcggagtggattatgaagtcttttgatggctgtttttgatattgatgcaagctttccaaccaatgtgtttgctatctcataacacctt 9360193  T
Q  139 gatca---gcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    || ||   |||||||||||| ||  |||||||||| |||||||| ||||||||| ||||    
T  9360194 gaccaacagcaaaagcaagttttcagtgtgaccctctggagtatatggaagcatcgaaa 9360252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 24268435 - 24268357
Alignment:
Q  113 atgtgttcgttattttacaacatcttgatcagca---aaagcaagtctttggtgtgaccctttggagtatttggaagca 188  Q
    ||||||| | ||||||||||||||| ||||||||   ||||||||| ||||||| ||| || |||||||| ||||||||    
T  24268435 atgtgtttgctattttacaacatctggatcagcagcaaaagcaagtatttggtgggactctatggagtatatggaagca 24268357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 195
Target Start/End: Original strand, 35826953 - 35827099
Alignment:
Q  52 cgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatcagcaaaagc 151  Q
    ||||| || ||||| |||||| ||||| |||  || |||| || |||||||||  | |||| |||||| | ||| || |||||||| ||||||||  |||    
T  35826953 cgcaccggattatgtagtactttgatggctgcctttgatcctgctgcaagtttcccaacaagtgtgtttgctatctttcaacatctcgatcagcagcagc 35827052  T
Q  152 aag---tctttggtgtgaccctttggagtatttggaagcatagaaat 195  Q
    ||    ||||||||||||| ||||||||||| |||||||||| ||||    
T  35827053 aacaaatctttggtgtgactctttggagtatctggaagcatataaat 35827099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 4595712 - 4595660
Alignment:
Q  142 cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||||||| ||  |||||| |||||||||||| ||||||||| ||||    
T  4595712 cagcaaaagcaagttttcagtgtgatcctttggagtatatggaagcatcgaaa 4595660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 25612025 - 25611993
Alignment:
Q  162 tgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||||||||||||||||||||| ||||    
T  25612025 tgtgaccctttggagtatttggaagcatcgaaa 25611993  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 14220530 - 14220380
Alignment:
Q  96 tgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatcagcaa-aagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||  ||||||||||||| | |||||||||| |||| ||||| ||| || |||||| ||||||||||||| |||||||| | ||||||||||||    
T  14220530 tgcaagtttcccgacaaatgtgtttgctattttacaatatctggatcaacaataaacaagtccttggtgtgaccctatggagtatctagaagcatagaaa 14220431  T
Q  195 tgatatggtctaaaataatattattgaatcaactcaatctatttgtcaacg 245  Q
    | | | ||| |  || ||||| ||||||||||||||| |||| ||| ||||    
T  14220430 taacaaggtttggaacaatatcattgaatcaactcaaactatatgtgaacg 14220380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 32283531 - 32283395
Alignment:
Q  61 ttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatca---gcaaaagcaagtct 157  Q
    |||||||||  | ||||| ||||||| ||| |||||||||| ||| | || |||||||| | ||| |||||||| || |||||   |||||||||| | |    
T  32283531 ttatggagtgttttgatggctgtttttgatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctggatcaacagcaaaagcaaattt 32283432  T
Q  158 ttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |  |||||||||| |||||||| ||||||||| ||||    
T  32283431 tcagtgtgaccctctggagtatatggaagcatcgaaa 32283395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 32577494 - 32577546
Alignment:
Q  142 cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||||| | ||  ||||||||||||||||||||||||||||| ||||    
T  32577494 cagcaaaagcaaattttcagtgtgaccctttggagtatttggaagcatcgaaa 32577546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 5839241 - 5839283
Alignment:
Q  161 gtgtgaccctttggagtatttggaagcatagaaatgatatggt 203  Q
    ||||||||||||||||||||||||||||| ||||  |||||||    
T  5839241 gtgtgaccctttggagtatttggaagcatcgaaacaatatggt 5839283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 27177062 - 27177225
Alignment:
Q  31 aaaaatgtgatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttac 130  Q
    |||| |||| ||| ||||||||||||  | |||||||||| | |||||  ||| ||||||| |  | |||||||| | ||||||||||| ||||||||||    
T  27177062 aaaagtgtgctttgttggcagcgcacaagattatggagtattttgatgggtgtcttcgatcctactacaagttttgcaacaaatgtgtttgttattttac 27177161  T
Q  131 aacatcttgatc---agcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatag 191  Q
    |||| || ||||   ||||||| ||||| ||| || ||||||| || ||||| |||||||||||    
T  27177162 aacacctagatccgaagcaaaaacaagttttttgtttgaccctatgaagtatctggaagcatag 27177225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 38452481 - 38452329
Alignment:
Q  39 gatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatctt 138  Q
    ||||| ||||||||  | ||| |||||||||  | ||||| ||||||| ||| |||||||||| ||| | || |||||||| | ||| |||||||| ||     
T  38452481 gatttgttggcagcagagtggattatggagtcttttgatggctgtttttgatattgatgcaagctttccaaccaatgtgtttggtatcttacaacacctg 38452382  T
Q  139 gatcagca---aaagcaagtctttggtgtgaccctttggagtatttggaagca 188  Q
    || |||||   ||||||||| ||  ||||||||||||||||||| ||||||||    
T  38452381 gaccagcagcaaaagcaagttttcagtgtgaccctttggagtatatggaagca 38452329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 17296308 - 17296199
Alignment:
Q  201 ggtctaaaataatattattgaatcaactcaatctatttgtcaacgagcagattctctcttcactagctaggtgaatgtccaaaccatgcaaaaacatgct 300  Q
    ||||| ||||||||||||||||||  |||||||||||| | |||| ||| ||||| || ||||||| | | ||||||  ||||||||||  || ||||||    
T  17296308 ggtctgaaataatattattgaatccgctcaatctatttatgaacgggcatattctatcctcactagttggatgaatgctcaaaccatgcgcaatcatgct 17296209  T
Q  301 cctagacaat 310  Q
    ||||| ||||    
T  17296208 cctaggcaat 17296199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 10213226 - 10213328
Alignment:
Q  95 atgcaagtttttcgacaaatgtgttcgttattttacaacatcttgat---cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatag 191  Q
    ||||||| ||| | || |||||||| | ||||||||||||||| |||   || ||||| ||||| |||| |||||| || |||||||| ||||||||| |    
T  10213226 atgcaagctttccaaccaatgtgtttgctattttacaacatctggatcaacatcaaaaacaagtatttgatgtgactctatggagtatatggaagcatcg 10213325  T
Q  192 aaa 194  Q
    |||    
T  10213326 aaa 10213328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 23797498 - 23797390
Alignment:
Q  39 gatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatctt 138  Q
    ||||| ||||||||  | ||| |||||||||  | ||||||||||||| ||| |||||||||| ||| | || |||||||| | ||| |||||||| ||     
T  23797498 gatttgttggcagcagagtggattatggagtcttttgatgactgttttagatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctg 23797399  T
Q  139 gatcagcaa 147  Q
    || ||||||    
T  23797398 gaccagcaa 23797390  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 23483967 - 23484080
Alignment:
Q  85 ttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatcagca---aaagcaagtctttggtgtgaccctttggagtattt 181  Q
    |||||||||| ||||||||| |||| |||||||||   |||| || ||||||| || |||||   ||| ||| ||||||||||||| || ||||||||||    
T  23483967 ttcgatcttgctgcaagtttctcgaaaaatgtgttttctattctataacatctggaccagcagcaaaaacaaatctttggtgtgacgctatggagtattt 23484066  T
Q  182 ggaagcatagaaat 195  Q
    ||||| ||||||||    
T  23484067 ggaagaatagaaat 23484080  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 51192638 - 51192502
Alignment:
Q  61 ttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatca---gcaaaagcaagtct 157  Q
    |||||||||  | ||||| ||||||| ||| |||||||||| ||| | || |||||||| | ||| |||||||| || |||||   |||||||||||| |    
T  51192638 ttatggagtgttttgatggctgtttttgatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctggatcaacagcaaaagcaagttt 51192539  T
Q  158 ttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |  |||||||||| |||||||| ||||||||| ||||    
T  51192538 tcagtgtgaccctctggagtatatggaagcatcgaaa 51192502  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 195
Target Start/End: Original strand, 48445997 - 48446156
Alignment:
Q  39 gatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatctt 138  Q
    ||||| ||||||||| | ||| |||||||||  | ||||||||||||| ||| |||||||||| ||| | ||||||||||| | ||| |||||||| ||     
T  48445997 gatttgttggcagcggagtggattatggagtcttttgatgactgtttttgatattgatgcaagctttccaacaaatgtgtttgctatcttacaacacctg 48446096  T
Q  139 gatcag---caaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaat 195  Q
    || |||   ||||| ||||| ||  |||| || || |||||||| ||||||||| |||||    
T  48446097 gaccagcaacaaaaacaagttttcagtgtaactctctggagtatatggaagcatcgaaat 48446156  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 26429874 - 26429822
Alignment:
Q  142 cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  26429874 cagcaaaagcaaatcttcagtgtgaccctttggagtatttggaagcatcgaaa 26429822  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 26006809 - 26006693
Alignment:
Q  81 tgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatcag---caaaagcaagtctttggtgtgaccctttggagt 177  Q
    |||||| ||| |||||||||||||| | || ||||||||   ||| |||||||| ||||| |||   ||||||||||| ||  |||||||||| |||| |    
T  26006809 tgtttttgatgttgatgcaagttttccaaccaatgtgttttctatcttacaacaccttgaccagcaacaaaagcaagttttcagtgtgaccctctggact 26006710  T
Q  178 atttggaagcatagaaa 194  Q
    || ||||||||| ||||    
T  26006709 atatggaagcatcgaaa 26006693  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 27453257 - 27453099
Alignment:
Q  39 gatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatctt 138  Q
    ||||| ||| ||||| | ||| |||||||||  | |||||  |||||| ||| |||||||||||||| |  | |||||||| | ||| |||||||| ||     
T  27453257 gatttgttgtcagcggagtggattatggagtcttttgatggatgtttttgatattgatgcaagttttccatccaatgtgtttgctatcttacaacacctc 27453158  T
Q  139 gatcagcaa---aagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    || ||||||   |||||||| ||  ||||||||||||||||||| ||||||||| ||||    
T  27453157 gaccagcaacaaaagcaagttttcagtgtgaccctttggagtatatggaagcatcgaaa 27453099  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 9610181 - 9610132
Alignment:
Q  145 caaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||| ||||    
T  9610181 caaaagcaaatcttcagtgtgaccctttggagtatttggaagcatcgaaa 9610132  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 30797480 - 30797428
Alignment:
Q  142 cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||||| | ||| ||||||| ||||||||||||||||||||| ||||    
T  30797480 cagcaaaagcaaatttttagtgtgactctttggagtatttggaagcatcgaaa 30797428  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 29242789 - 29242737
Alignment:
Q  142 cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||||||| | ||  ||||||||||||||| ||||||||||||| ||||    
T  29242789 cagcaaaagcaaatgttcagtgtgaccctttggattatttggaagcatcgaaa 29242737  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 215816 - 215974
Alignment:
Q  39 gatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatctt 138  Q
    ||||| ||||||||| | ||| |||||||||  | ||||||||||||| ||| |||||||||| ||| | || |||||||| | ||  |||||||| ||     
T  215816 gattttttggcagcggagtggattatggagtcttttgatgactgtttttgattttgatgcaagctttccaaccaatgtgtttgctaccttacaacacctg 215915  T
Q  139 g---atcagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |   | |||||||||||||| ||  |||||| ||||| |||||  ||||||||| ||||    
T  215916 gaccagcagcaaaagcaagttttcagtgtgatcctttagagtaaatggaagcatcgaaa 215974  T

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Target: scaffold0607 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 5145 - 5178
Alignment:
Q  161 gtgtgaccctttggagtatttggaagcatagaaa 194  Q
    ||||||||||||||||||||||||||||| ||||    
T  5145 gtgtgaccctttggagtatttggaagcatcgaaa 5178  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 186602 - 186635
Alignment:
Q  161 gtgtgaccctttggagtatttggaagcatagaaa 194  Q
    ||||||||||||||||||||||||||||| ||||    
T  186602 gtgtgaccctttggagtatttggaagcatcgaaa 186635  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 7436281 - 7436165
Alignment:
Q  80 ctgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatcttgatcagca--aaagcaagtctttggtgtgaccctttggagt 177  Q
    ||||||| ||| |||||||||| ||| | || |||||||| | ||| |||||||| || ||||| ||  ||||||||| ||  |||||||||| | ||||    
T  7436281 ctgtttttgatattgatgcaagctttccaaccaatgtgtttgctatcttacaacacctggatcaacacaaaagcaagttttcagtgtgaccctctagagt 7436182  T
Q  178 atttggaagcatagaaa 194  Q
    || ||||||||| ||||    
T  7436181 atatggaagcattgaaa 7436165  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 32956914 - 32956947
Alignment:
Q  161 gtgtgaccctttggagtatttggaagcatagaaa 194  Q
    ||||||||||||||||||||||||||||| ||||    
T  32956914 gtgtgaccctttggagtatttggaagcatcgaaa 32956947  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 27726 - 27568
Alignment:
Q  39 gatttattggcagcgcactggtttatggagtactctgatgactgttttcgatcttgatgcaagtttttcgacaaatgtgttcgttattttacaacatctt 138  Q
    ||||||||||||||  | ||| |||||||||  | ||||| ||||||| ||| |||||||||| ||| |  | |||||||| | ||| ||||||||  |     
T  27726 gatttattggcagcagagtggattatggagtcttttgatggctgtttttgatattgatgcaagctttccagccaatgtgtttgctatcttacaacacttg 27627  T
Q  139 gatcag---caaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    || |||   ||||||||||| ||  |||||||||| | |||||| ||||||||| ||||    
T  27626 gaccagcaacaaaagcaagttttcagtgtgaccctctagagtatatggaagcattgaaa 27568  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 57856 - 57908
Alignment:
Q  142 cagcaaaagcaagtctttggtgtgaccctttggagtatttggaagcatagaaa 194  Q
    |||||||| ||||| ||  ||||||||||||||||||| ||||||||| ||||    
T  57856 cagcaaaaacaagttttcagtgtgaccctttggagtatatggaagcatcgaaa 57908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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