View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_high_40 (Length: 441)
Name: NF16091_high_40
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_40 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 135 - 427
Target Start/End: Original strand, 13852796 - 13853088
Alignment:
| Q |
135 |
ggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacattccaagtccaaccgtt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13852796 |
ggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgacaactctcgacattccaagtccaaccgtt |
13852895 |
T |
|
| Q |
235 |
caagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtgg |
334 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||| |
|
|
| T |
13852896 |
caagagcggtaagcgtgtccatccgaagcttcactttaagtgatccaattgagtcatgggatttgattacaagtgtttggagtcttgacggtcgacttgg |
13852995 |
T |
|
| Q |
335 |
aggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttggaaggatgt |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13852996 |
aggactttctaaaatattaatggaatccagattcctacactcacttatccgaagtctttggagtgcagggaaaccatcaagttggaaggatgt |
13853088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 10503431 - 10503024
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| ||| |||||||||||| |||||| ||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
10503431 |
aagggagatgggaagcaacgactccttcatcaaggtgttaaatatatcatcacctgctccaattttcagtcttgaaagagcggtcagatcttcaagaccc |
10503332 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
|||| | | | ||| | ||||| | ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| | |
|
|
| T |
10503331 |
catttcattataggagttgttgttctttgggaccaaatatcaattgattgtaatttgggaggaagacaaactccttcacaaaatgataactcctgacaat |
10503232 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
||||||||||| ||||||||| || || |||| |||| ||||||| |||| ||||||| ||| ||| |||||||| | ||| ||||| ||||||||| |
|
|
| T |
10503231 |
ccaagtccaactcttcaagagccgtgagcgtgttcatctgaagcttgacttcaaatgattcaactgaatcatgggattggatatgaagtgattggaggct |
10503132 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttgg |
419 |
Q |
| |
|
|| | ||| |||||||| |||| || ||||||||||| ||||||||| | ||| || ||||||||||||||||||||||||||||||| | |
|
|
| T |
10503131 |
cgaatattggtgtaaaggactttttaaagtaaaaatggaatccaaattcctacagttactaatgttaagtctttggagtgcagggaaaccatcaagtgga |
10503032 |
T |
|
| Q |
420 |
aaggatgt |
427 |
Q |
| |
|
|||||||| |
|
|
| T |
10503031 |
aaggatgt |
10503024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 10373062 - 10373467
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |||| |||| |||| ||||| || |||||||| |||||| |
|
|
| T |
10373062 |
aagggagatgggtagcaacgactccttcatcaaggtgttaactatatcatcatcctttctaatactcaagcttgacagagctgttagatcttggagaccc |
10373161 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
||||||||||| ||||||||| | || | || ||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10373162 |
cattccgtaaccggcggtgttattcttcgagatgaaatccaaattgattgtaatttgagaggtagacaaactccttcacaaaatgacaactctcgacatc |
10373261 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
|||| ||||| |||||||||||| || |||||||| |||||| |||| |||| || ||||||| ||||||| ||| ||||| || |||||| |
|
|
| T |
10373262 |
ccaaactcaacctttcaagagcggtgagcatgtccatcttaagcttgacttcaaataattcaattgaagcatgggagaagatctgaagtgattcgaggct |
10373361 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttgg |
419 |
Q |
| |
|
|||| | | ||| |||||||||| ||||| ||||||||||||||||||||| | ||||| |||| ||||||| ||||||||||||||||| | |
|
|
| T |
10373362 |
cgacgaccgaggtgaaggactttctgaaatacaaatggaatccagattcctacaattcagtatcataagtgtttggaggacagggaaaccatcaagtgga |
10373461 |
T |
|
| Q |
420 |
aaggat |
425 |
Q |
| |
|
|||||| |
|
|
| T |
10373462 |
aaggat |
10373467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 10129771 - 10129367
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
10129771 |
aagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcaccctttccaatactcaatcttgaaagagcggtcaaatcttgaagaccc |
10129672 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
||||| || |||||||||| || | ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
10129671 |
cattctgtcacaggcggtgctgttcttttggactgtatctcaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcacatt |
10129572 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
| | ||||| ||||||||| || || |||| ||| |||||| |||| |||| || ||||||| |||||||| |||| ||||| || |||| |
|
|
| T |
10129571 |
ttagattcaacctttcaagagctgtgagcatgtcaatcttaagcttgacttcaaataattcaattgaatcatgggatatgatataaagtgatttgagg-- |
10129474 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttgg |
419 |
Q |
| |
|
|||| | | ||| || |||||| |||||| ||||||||||||| ||||||| | | ||| |||| ||||||| |||||||||||||||||| | |
|
|
| T |
10129473 |
-gacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctacaattatgtatggtaagtgtttggagcgcagggaaaccatcaagtgga |
10129375 |
T |
|
| Q |
420 |
aaggatgt |
427 |
Q |
| |
|
|||||||| |
|
|
| T |
10129374 |
aaggatgt |
10129367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 427
Target Start/End: Original strand, 10361012 - 10361428
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatct |
110 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| | ||||| || |||| || | |
|
|
| T |
10361012 |
cagagacacaagggagacgggtagcaatgactccttcatcaaggtgttaactatatcatcaccctttccaatacccaagttggaaagtgctgtcaaatat |
10361111 |
T |
|
| Q |
111 |
tgaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataact |
210 |
Q |
| |
|
|| ||||||||||| || |||||| ||| || | ||| |||| |||| ||||||||||||||| |||||||||||||||||||||||||| || |||| |
|
|
| T |
10361112 |
tggagaccccattctgtcacaggcagtgctgttcttttggactgtatcataattgattgtaatttgggaggtagacaaactccttcacaaaacgacaact |
10361211 |
T |
|
| Q |
211 |
ctcgacattcca-agtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtg |
309 |
Q |
| |
|
|| | || || | ||| ||||||||||||||||| ||| ||||||||| |||||| |||| |||| || ||||||| |||||||| |||||| ||||| |
|
|
| T |
10361212 |
ctggccaatctagagt-caaccgttcaagagcggcaagcgtgtccatcttaagcttgacttcaaataattcaattgaatcatgggatatgattataagtg |
10361310 |
T |
|
| Q |
310 |
tttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaacc |
409 |
Q |
| |
|
|| |||||| |||| | | ||| || |||||| |||||| ||||||||||||| ||||||| |||| ||| |||| || |||| ||||||||||| |
|
|
| T |
10361311 |
attcgaggctcgacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctacaatcacgtatggtaagtgttcggagcgcagggaaacc |
10361410 |
T |
|
| Q |
410 |
atcaagttggaaggatgt |
427 |
Q |
| |
|
||| ||| | |||||||| |
|
|
| T |
10361411 |
atcgagtggaaaggatgt |
10361428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 427
Target Start/End: Complemental strand, 10263554 - 10263143
Alignment:
| Q |
16 |
acaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaag |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||| ||||| || |||| || ||| || |
|
|
| T |
10263554 |
acaaaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcacccttttgaatagtcaagtaggaaagtgctgtcaaatattggag |
10263455 |
T |
|
| Q |
116 |
accccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcga |
215 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
10263454 |
accccattccgtaaccggcggtgttgttttttgggtagaaatctcaattgattgtaatttgggaggtagacaaactccttcagaaaatgacaactctgca |
10263355 |
T |
|
| Q |
216 |
cattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttgga |
315 |
Q |
| |
|
||| | ||||| |||||||||||| || | |||||| |||||| |||| |||| || ||||||| |||||||| ||||| ||||| || || |
|
|
| T |
10263354 |
catgttagaaacaacctttcaagagcggtgagcatttccatcttaagcttgacttcaaataattcaattgaatcatgggatttgatagtaagtgattcga |
10263255 |
T |
|
| Q |
316 |
ggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaag |
415 |
Q |
| |
|
|||| |||| | | ||| || ||||||||||||| ||||||||||||| | ||||||| | ||| |||| ||||||| |||||||||||||| || |
|
|
| T |
10263254 |
ggctcgacgaccgaggtgaagacctttctaaaatataaatggaatccagacttctacacttatatatgtcaagtgtttggagggcagggaaaccatcgag |
10263155 |
T |
|
| Q |
416 |
ttggaaggatgt |
427 |
Q |
| |
|
| | |||||||| |
|
|
| T |
10263154 |
tggaaaggatgt |
10263143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 10034852 - 10034445
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |||| | ||||| || |||| || ||| |||||| |
|
|
| T |
10034852 |
aagggagatgggtagcaatgactccttcatcaaggtgttaactatatcatcacccttttcaatactcaagttggaaagtgctgtcaaatattggagaccc |
10034753 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
|||||||| |||| || ||| | ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
10034752 |
cattccgttacagatggctttgttctttgggatgaaatcgtaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactctgcacatt |
10034653 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
| | ||||| ||||||||| || || |||||||| |||||| |||| |||| || ||||||| |||||||| | ||| ||||| || |||||| |
|
|
| T |
10034652 |
ttagattcaacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataattcaattgaatcatgggattcgatatgaagtgattcgaggct |
10034553 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttgg |
419 |
Q |
| |
|
|||| | | ||| || |||||| |||||| ||||||| ||||| ||||||| | | |||| ||||| ||||||| ||||||||||||||||| | |
|
|
| T |
10034552 |
cgacgaccgaggtgaagacctttctgaaatataaatggaaaccagactcctacaattccatatctgaagtgtttggaggacagggaaaccatcaagtgga |
10034453 |
T |
|
| Q |
420 |
aaggatgt |
427 |
Q |
| |
|
|||||||| |
|
|
| T |
10034452 |
aaggatgt |
10034445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 9841715 - 9841300
Alignment:
| Q |
12 |
agagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatctt |
111 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||| ||| ||||| || |||| || || |
|
|
| T |
9841715 |
agagacacaagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttatcaattcgcaagtaggaaagtgccgtcaaatatt |
9841616 |
T |
|
| Q |
112 |
gaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactc |
211 |
Q |
| |
|
| |||||||||||||||| ||||||| || | |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9841615 |
ggtgaccccattccgtaaccggcggtgctgttttttgggtagaaatagcaattgattgtaatttgggaggtagacaaactccttcacaaaatgacaactc |
9841516 |
T |
|
| Q |
212 |
tcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtt |
311 |
Q |
| |
|
| ||||| | | |||| ||||||||| || || |||||||| |||||| |||| |||| || ||||||| |||||||| | ||||| ||||| | |
|
|
| T |
9841515 |
tgcacattttagattcaacatttcaagagctgtgagcatgtccatcttaagcttgacttcaaataattcaattgaatcatgggattcgattataagtgat |
9841416 |
T |
|
| Q |
312 |
tggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccat |
411 |
Q |
| |
|
| |||||| |||| | ||| || |||||| |||||| ||||||||| ||| ||||||| ||| ||| |||| ||||||| ||||||||||||| |
|
|
| T |
9841415 |
tcgaggctcgacgacagaggtgaagacctttctgaaatataaatggaatctagactcctacaatcaagtatggtaagtgtttggagcgcagggaaaccat |
9841316 |
T |
|
| Q |
412 |
caagttggaaggatgt |
427 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
9841315 |
caagtgggaaggatgt |
9841300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 365
Target Start/End: Complemental strand, 9852596 - 9852243
Alignment:
| Q |
12 |
agagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatctt |
111 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||| ||||| ||||||||| |||| || || |
|
|
| T |
9852596 |
agagacacaagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatccacaatgatgaaagagctgtcaaatatt |
9852497 |
T |
|
| Q |
112 |
gaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactc |
211 |
Q |
| |
|
| ||||||||||||||||| ||||||| || | ||| || |||||||||||| | |||||| ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
9852496 |
ggagaccccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgttcttaatttgggaggtagacaaactccttcagaaaatgacaactt |
9852397 |
T |
|
| Q |
212 |
tcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtt |
311 |
Q |
| |
|
| | |||| || | ||| |||||||||||| || |||||||| |||||| |||| |||| || ||||||| | |||||| ||||| ||||| | |
|
|
| T |
9852396 |
ttggcatttcatatgcaaatcttcaagagcggtgagcatgtccatcttaagcttgacttcaaataattcaattgaattatgggatttgatccgaagtgat |
9852297 |
T |
|
| Q |
312 |
tggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccaga |
365 |
Q |
| |
|
||||||||||||| | | ||| || ||||||||||||| ||||||||||||| |
|
|
| T |
9852296 |
tggaggcttgacgaccgaggtgaagacctttctaaaatataaatggaatccaga |
9852243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 10520334 - 10519927
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||| ||| ||||| || |||| || ||| |||||| |
|
|
| T |
10520334 |
aagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatacccaagtcggaaagtgctgtcaaatattggagaccc |
10520235 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
||||||||||| ||||||| || | |||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||| | |
|
|
| T |
10520234 |
cattccgtaaccggcggtgctgttttttgggtagaaatcttaattgattgcaatttgggaggtagacaaactccttcacaaaatgacaactctacacaat |
10520135 |
T |
|
| Q |
220 |
cca-agtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggc |
318 |
Q |
| |
|
| | ||| ||||| ||||||||| || || |||||||| |||||| |||| |||| || ||||||| ||| |||| |||| |||||| || ||||| |
|
|
| T |
10520134 |
ctagagt-caacctttcaagagctgtgagcatgtccatcttaagcttgacttcaaataattcaattgaatcaggggatatgatctcaagtgattcgaggc |
10520036 |
T |
|
| Q |
319 |
ttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttg |
418 |
Q |
| |
|
| |||| | | ||| || |||||| |||||| ||||||||||||| |||| ||||||| ||| |||| ||||||| |||||||||||||| ||| | |
|
|
| T |
10520035 |
tcgacgaccgaggtgaagacctttctgaaatataaatggaatccagactcctgcactcacatatggtaagtgtttggagcgcagggaaaccatcgagtgg |
10519936 |
T |
|
| Q |
419 |
gaaggatgt |
427 |
Q |
| |
|
|||||||| |
|
|
| T |
10519935 |
aaaggatgt |
10519927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 76 - 427
Target Start/End: Complemental strand, 10531454 - 10531103
Alignment:
| Q |
76 |
ttccaatagtcaatgttgaaagagcggtcagatcttgaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaattt |
175 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||| ||||||||||| || |||||||| |||||| ||||| | | |||||||||||||||||||| |
|
|
| T |
10531454 |
ttccaattctcaatcttgaaagagcggtcaggccttggagaccccattctgttacaggcggcgttgctctttggaaagatatcacaattgattgtaattt |
10531355 |
T |
|
| Q |
176 |
aggaggtagacaaactccttcacaaaatgataactctcgacattcca-agtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaa |
274 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||||| |||| || | ||| ||| |||||||||| || || ||||||||||||||||| ||||||| |
|
|
| T |
10531354 |
gggaggtagacaaattccttcacaaaataacaactcgggacaatctagagt-caattgttcaagagcagtgagcgtgtccatccgaagcttgactttaag |
10531256 |
T |
|
| Q |
275 |
tgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacac |
374 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||| | |||||||||| | | | |||||||||||||| ||||| || ||||||| | ||||||| |
|
|
| T |
10531255 |
caatccaattgaatcatgggatttgattttaagtgatcggaggcttgatgaccgacgtggaggactttctgaaataaaaaccgaatccatactcctacaa |
10531156 |
T |
|
| Q |
375 |
tcacttatcagaagtctttggagtgcagggaaaccatcaagttggaaggatgt |
427 |
Q |
| |
|
|| || |||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
10531155 |
aaacaaatgtaaagtattcggagtgcagggaaaccatcaagttggaaggatgt |
10531103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 10666323 - 10665908
Alignment:
| Q |
12 |
agagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatctt |
111 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||| |||| ||||| || |||| || || |
|
|
| T |
10666323 |
agagacacaagggatatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttcaatactcaagtaggaaagtgctgtcaaatatt |
10666224 |
T |
|
| Q |
112 |
gaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactc |
211 |
Q |
| |
|
| ||||||||||||||||| ||||| ||| | |||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10666223 |
ggagaccccattccgtaaccggcggagttattctttgagatgaaatcacaattgtttgtaatttgggaggtagacaaactccttcacaaaatgacaactg |
10666124 |
T |
|
| Q |
212 |
tcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtt |
311 |
Q |
| |
|
| |||| | |||| ||||||||| || || |||||||| |||||| |||| |||| || ||||||| |||||||| |||| |||||| | |
|
|
| T |
10666123 |
tgcacatcttagaatcaacttttcaagagcagtgagcatgtccatcttaagcttgacttcaaataattcaattgaatcatgggatctgatcacaagttct |
10666024 |
T |
|
| Q |
312 |
tggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccat |
411 |
Q |
| |
|
| ||| || |||| | || |||||||||||||||| ||||||| ||||| ||||||| | |||| |||| ||||||| ||||||||||||| |
|
|
| T |
10666023 |
tcgagtctcgacgactgacatgaaggactttctaaaatacaaatggaaaccagactcctacaattctgtatccaaagtgtttggagcgcagggaaaccat |
10665924 |
T |
|
| Q |
412 |
caagttggaaggatgt |
427 |
Q |
| |
|
||||| | |||||||| |
|
|
| T |
10665923 |
caagtggaaaggatgt |
10665908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 10583362 - 10583172
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||| || | |||||||||| || ||||||| |||||| |
|
|
| T |
10583362 |
aagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcatcctttccaatactccagcttgaaagagctgttagatctttgagaccc |
10583263 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataact |
210 |
Q |
| |
|
||||||||||| ||||||| || | |||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
10583262 |
cattccgtaaccggcggtgctgttttttgggtaaaaatcacaattgatcgtaatttgagaggtagacaaactccttcagaaaatgacaact |
10583172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 11779202 - 11779609
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| | ||||||| |||| | ||||||||| || | |||||||| ||| | | ||| |||||| |
|
|
| T |
11779202 |
aagggagataggtagcaacaaatccttcatcaaggtggtgactatattatcatcatttccaataaccagttctgaaagagtggtttggttttggagaccc |
11779301 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
||||| ||||| || ||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||| | |
|
|
| T |
11779302 |
cattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaatttgggaggtagacaaactctttcacaaaatgaaaacactccttgat |
11779401 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
|| |||| |||||||| || || | || |||||||||||| |||||||| || ||||| | |||||||| ||||| |||| | ||||||| |
|
|
| T |
11779402 |
tcagaaacaacttctcaagagcagtgagcgagttcatccgaagcttgactttaaacaattcaattaaatcatgggatctgatttcaagatgtcggaggct |
11779501 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttgg |
419 |
Q |
| |
|
|||| | ||| ||| |||||||||||| ||||||||||||| ||||||| ||||||| |||| ||||||| ||||||||||||||||| || |
|
|
| T |
11779502 |
cgacgactgaggtgaaggtgtttctaaaatataaatggaatccagactcctacaatcacttaagtcaagtgtttggagcacagggaaaccatcaagtggg |
11779601 |
T |
|
| Q |
420 |
aaggatgt |
427 |
Q |
| |
|
|||||||| |
|
|
| T |
11779602 |
aaggatgt |
11779609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 10431261 - 10431606
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||| |||||| ||||| || |||| || ||| |||||| |
|
|
| T |
10431261 |
aagggagatgggtagcaacgactccttcatcaaggtgttaaatatatcatcacccttttgaattgtcaataaggaaagtgctgtcaaatattggagaccc |
10431360 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
||||||||||| ||||| ||| | || | || ||| | ||||||||||||||| ||||||||||||||||||||||||||||| | || | |||||| |
|
|
| T |
10431361 |
cattccgtaaccggcggagttattcttcgagatgaaaaccaaattgattgtaatttgggaggtagacaaactccttcacaaaatgacagcttttgacatt |
10431460 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
|| | |||| |||||||||||| || |||||||| |||||| |||| |||| || ||||||| | |||||| |||| ||||| || |||||| |
|
|
| T |
10431461 |
tcatatgcaacttttcaagagcggtgagcatgtccatcttaagcttgacttcaaataattcaattgaataatgggatctgatataaagtgattcgaggct |
10431560 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccaga |
365 |
Q |
| |
|
|||| | | ||| || |||||| |||||| ||||||||||||| |
|
|
| T |
10431561 |
cgacgaccgaggtgaagacctttctgaaatataaatggaatccaga |
10431606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 76 - 427
Target Start/End: Complemental strand, 10680252 - 10679902
Alignment:
| Q |
76 |
ttccaatagtcaatgttgaaagagcggtcagatcttgaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaattt |
175 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||| ||| |||||||| | |||||||| |||||| || || | | |||||||||||||||||||| |
|
|
| T |
10680252 |
ttccaattctcaatcttgaaagagcggtcaggccttggagatcccattccattacaggcggcgttgctcttcggaaagagatcacaattgattgtaattt |
10680153 |
T |
|
| Q |
176 |
aggaggtagacaaactccttcacaaaatgataactctcgacattcca-agtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaa |
274 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||| |||| || | ||| | | |||||||||| || || ||||||||||||||||| ||||||| |
|
|
| T |
10680152 |
gggaggtagacaaactccttcac-aaataacaactctggacaatctagagt-ctattgttcaagagcagtgagcgtgtccatccgaagcttgactttaag |
10680055 |
T |
|
| Q |
275 |
tgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacac |
374 |
Q |
| |
|
||||||||| ||||| || |||||| ||||| |||||||||| ||| | ||||| ||||||||| ||||| || ||||||| | ||||||| |
|
|
| T |
10680054 |
cagtccaattgaatcatgtgatttgattttaagtgattggaggcttaacgattgatgtgatggactttctgaaataaaaactgaatccatactcctacaa |
10679955 |
T |
|
| Q |
375 |
tcacttatcagaagtctttggagtgcagggaaaccatcaagttggaaggatgt |
427 |
Q |
| |
|
|| || |||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
10679954 |
aaacaaatgtaaagtattcggagtgcagggaaaccatcaagttggaaggatgt |
10679902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 11772083 - 11771898
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
||||||||| || ||||||| ||| |||||||||||| | ||||||| |||| | ||||||||| |||| | ||||||| ||| | | ||| |||||| |
|
|
| T |
11772083 |
aagggagataggcagcaacaactctttcatcaaggtggtgactatattatcatcatttccaataaccaatttcgaaagagtggtttggttttggagaccc |
11771984 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatga |
205 |
Q |
| |
|
||||| ||||| || ||||||| ||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
11771983 |
cattctgtaactggtggtgttgttatttgggaaaaactcacaattgattgtaagttgggaggtagacaaactccttcacaaaatga |
11771898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 13852654 - 13852765
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgc-------taactatatcatcaccctttccaatagtcaatgttgaaagagcggt |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13852654 |
cagagacaaaagggagatgggtatcaacagctccttcatcaaggtgctaagtgctaactatatcatcactctttccaatagtcaatgttgaaagagcggt |
13852753 |
T |
|
| Q |
104 |
cagatcttgaag |
115 |
Q |
| |
|
||||||| |||| |
|
|
| T |
13852754 |
cagatctagaag |
13852765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 9980315 - 9980125
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaa-gagcggtcagatcttgaagacc |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |||| |||| || |||| | || |||| || ||| ||||| |
|
|
| T |
9980315 |
aagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaattctcaa-gtcgaaaagtgctgtcaaatattggagacc |
9980217 |
T |
|
| Q |
119 |
ccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataact |
210 |
Q |
| |
|
|||||||||||| ||||||| || | ||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
9980216 |
ccattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttgagaggtagacaaactccttcagaaaatgacaact |
9980125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 10091655 - 10091461
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatct |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| ||| |||| || ||||||||||| | ||| | ||| ||||| ||||||| ||| |||||| |
|
|
| T |
10091655 |
cagagacacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctctttaatcatcaattcggaaagagtggttagatct |
10091556 |
T |
|
| Q |
111 |
tgaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatga |
205 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| | ||| ||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10091555 |
tggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtagacaaactccttcacaaaatga |
10091461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 10198537 - 10198343
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatct |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| ||| |||| || ||||||||||| | ||| | ||| ||||| ||||||| ||| |||||| |
|
|
| T |
10198537 |
cagagacacaagggagatgggtagcaacgactccgtcaccaagttgttaactatatcacctgcctctttaatcatcaattcggaaagagtggttagatct |
10198438 |
T |
|
| Q |
111 |
tgaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatga |
205 |
Q |
| |
|
|| ||||||||||||||||| ||||||||| | ||| ||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10198437 |
tggagaccccattccgtaaccggcggtgttatttttttggaaaaaataacaatcttttgtaatttgggaggtagacaaactccttcacaaaatga |
10198343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 11021988 - 11021898
Alignment:
| Q |
233 |
ttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgac |
323 |
Q |
| |
|
||||||||| || |||||||||||||||| || ||||||| |||| |||||||||||||||| ||||| ||||| | ||||||||||| |
|
|
| T |
11021988 |
ttcaagagcagtgagtgtgtccatccgaacattgactttaagtgattcaattgagtcatgggatatgattttaagtgatcggaggcttgac |
11021898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 10192954 - 10192866
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagag |
99 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| || | ||||||| ||||||||||| || ||||| |||| |||| ||||||||| |
|
|
| T |
10192954 |
cagagacacaagggagatgggtagcaacggctcttttaccaaggtgttaactatatcaccatccttttcaattaccaatcttgaaagag |
10192866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 10086034 - 10085946
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagag |
99 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||| || | ||||||| ||||||||||| || ||||| |||| |||| ||||||||| |
|
|
| T |
10086034 |
cagagacacaagggagatggttagcaacggctcttttaccaaggtgttaactatatcaccatccttttcaattaccaatcttgaaagag |
10085946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 11771869 - 11771808
Alignment:
| Q |
234 |
tcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatggga |
295 |
Q |
| |
|
|||||||||||||| | || |||||||||||| |||||||| || ||||||| |||||||| |
|
|
| T |
11771869 |
tcaagagcggtaagcgagttcatccgaagcttgactttaaacaattcaattgaatcatggga |
11771808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 12131098 - 12131049
Alignment:
| Q |
21 |
agggagatgggtagcaacagctccttcatcaaggtgctaactatatcatc |
70 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||| |||| |||||||| |
|
|
| T |
12131098 |
agggagatgggcagcaactgctccttcaacaaggtgttaacaatatcatc |
12131049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 415
Target Start/End: Complemental strand, 26909737 - 26909342
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| | |||||| ||||| | ||||||||| |||||||| ||| |||||||| |||| | |
|
|
| T |
26909737 |
aagggagatgggtagcaacaactccttcatcaaggtgttaaatgtatcatgaccctctttgatagtcaattctgaaagagtggttagatcttggagacac |
26909638 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||||| ||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| | |
|
|
| T |
26909637 |
cattccgtaacagacggtgttgttatttgagaccaaaggtcaattgattgtaagttgggaggtagacaaacaccttcacaaaatgacaactctcgacagt |
26909538 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
||| | |||| |||||||| | || || ||||||||||||||||||||||||||| || ||||||| |||||||| |||||| ||||| || ||||| |
|
|
| T |
26909537 |
ccagatacaactgttcaagatctgtgagcgtgtccatccgaagcttcactttaaataattcaattgaatcatgggatttgattttaagtgattcaaggct |
26909438 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaag |
415 |
Q |
| |
|
|||||| | ||||| |||| ||||| |||||| ||||||||||| | ||||||| || || ||| |||||||| ||||||||||||||||| |
|
|
| T |
26909437 |
tgacggccgatgtgaaggagtttctgaaatataaatggaatccacactcctacaatcgtaaattttaagactttggagagcagggaaaccatcaag |
26909342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 11 - 427
Target Start/End: Complemental strand, 11487887 - 11487471
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatct |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
11487887 |
cagagacacaagggagatgggtagcaacgactgcttcatcaaggtgttaagtatatcatcacccactccaatagtcaaccgtgaaagagcggtcagatct |
11487788 |
T |
|
| Q |
111 |
tgaagaccccattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataact |
210 |
Q |
| |
|
| ||||||||||||||||||||||| |||| | ||| ||| ||||| ||||||||| |||||| ||||||||| |||| ||||||||||||| |||| |
|
|
| T |
11487787 |
ttgagaccccattccgtaacaggcggcgttgatctttccgacaaaatctcaattgattctaatttgggaggtagagaaacatcttcacaaaatgacaact |
11487688 |
T |
|
| Q |
211 |
ctcgac-attccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtg |
309 |
Q |
| |
|
|| ||| |||| || | || | ||||||||| || || ||||||||||||| || |||| || ||||||||||||||||||||| |||||| |||| | |
|
|
| T |
11487687 |
ctggacaattcagagacaaaac-ttcaagagcagtgagcatgtccatccgaagtttgacttgaagtgatccaattgagtcatgggatttgatttcaagag |
11487589 |
T |
|
| Q |
310 |
tttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaacc |
409 |
Q |
| |
|
| |||||||||||| | | || |||||||||||||||| ||||||||||||| |||||| ||| || ||||||||||| ||||||||||| |
|
|
| T |
11487588 |
atcggaggcttgacgaccaacatgaaggactttctaaaataaaaatggaatccagacacctacaatcatatagttttagtctttggagcgcagggaaacc |
11487489 |
T |
|
| Q |
410 |
atcaagttggaaggatgt |
427 |
Q |
| |
|
||||||| | |||||||| |
|
|
| T |
11487488 |
atcaagtggaaaggatgt |
11487471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 421
Target Start/End: Original strand, 44955024 - 44955280
Alignment:
| Q |
165 |
gattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacattccaagtc-caaccgttcaagagcggtaagtgtgtccatccgaagc |
263 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||||| | || ||| || |||| |||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
44955024 |
gattgtaatttgggaggtaggcaaacaccttcacaaaatgacagcttcagactttg-aagtgacaactcttcaagagcagtaagtgtatccatccgaaga |
44955122 |
T |
|
| Q |
264 |
ttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggcttgacggtccatgtggaggactttctaaaatattaatggaatcca |
363 |
Q |
| |
|
|| ||||||| |||| |||| |||||||||| ||||| ||||| | ||||||||||| | | ||| ||||||||| ||||| ||| ||||||| |
|
|
| T |
44955123 |
ttgactttaagtgattcaataaagtcatgggatgtgattgtaagtgatcaaaggcttgacggccgaggtgaaggactttccaaaatgaaaattgaatcca |
44955222 |
T |
|
| Q |
364 |
gattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttggaa |
421 |
Q |
| |
|
|| ||||||| |||| || |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
44955223 |
gactcctacaaccactaatgttaagtctttggagcacagggaaaccatcaagtgggaa |
44955280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 54822 - 55229
Alignment:
| Q |
20 |
aagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatcttgaagaccc |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||| ||| ||||||| |||| || ||| |||||| |
|
|
| T |
54822 |
aagggagatgggtagcaatgactccttcatcaaggtgttaaatatatcatcaccctttacaatacacaaaaaaaaaagagctgtcaaatattggagaccc |
54921 |
T |
|
| Q |
120 |
cattccgtaacaggcggtgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgataactctcgacatt |
219 |
Q |
| |
|
||||||||||| ||||||| || | ||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| | | |||| |
|
|
| T |
54922 |
cattccgtaaccggcggtgctgtttttttggtagaaatcacaattgattgtaatttgagaggtagacaaactccttcagaaaatgacaacttttggcatt |
55021 |
T |
|
| Q |
220 |
ccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgattacaagtgtttggaggct |
319 |
Q |
| |
|
|| | ||| |||||| |||| || | |||||| |||||| |||| |||| || ||||||| | | ||| | ||||| ||||| || |||||| |
|
|
| T |
55022 |
tcatatgcaaattttcaagggcggagagcatttccatcttaagcttgacttcaaataattcaattgaataacaggattcgattataagtgattcgaggct |
55121 |
T |
|
| Q |
320 |
tgacggtccatgtggaggactttctaaaatattaatggaatccagattcctacactcacttatcagaagtctttggagtgcagggaaaccatcaagttgg |
419 |
Q |
| |
|
|||| | | ||| |||||||||| ||||| ||||||| ||||| ||||||| |||||| |||| ||||||| |||||||||||||||||| | |
|
|
| T |
55122 |
cgacgaccgaggtgaaggactttctgaaatacaaatggaaaccagactcctacatctacttatgtcaagtgtttggagggcagggaaaccatcaagtgga |
55221 |
T |
|
| Q |
420 |
aaggatgt |
427 |
Q |
| |
|
|||||||| |
|
|
| T |
55222 |
aaggatgt |
55229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 17850134 - 17850428
Alignment:
| Q |
11 |
cagagacaaaagggagatgggtagcaacagctccttcatcaaggtgctaactatatcatcaccctttccaatagtcaatgttgaaagagcggtcagatct |
110 |
Q |
| |
|
|||||||| ||||| || || |||||| |||||||||||||||| | |||||||||||| ||||||||| | |||||| ||||||||| || || || |
|
|
| T |
17850134 |
cagagacacgagggatattgggagcaacgactccttcatcaaggtgttcactatatcatcatcctttccaagactcaatgatgaaagagcagttaggcct |
17850233 |
T |
|
| Q |
111 |
tgaagaccccattccgtaacaggcgg---tgttgctatttgggaccaaatcacaattgattgtaatttaggaggtagacaaactccttcacaaaatgata |
207 |
Q |
| |
|
|| ||||||||||| || |||||||| ||||| | || |||| ||| ||||||||||||| || |||||||| |||||||| |||||||||| | |
|
|
| T |
17850234 |
tggagaccccattctgttacaggcggggctgttgttcttcgggaatgaatatcaattgattgtaacttgggaggtagggaaactcctccacaaaatgaca |
17850333 |
T |
|
| Q |
208 |
actctcgacattccaagtccaaccgttcaagagcggtaagtgtgtccatccgaagcttcactttaaatgatccaattgagtcatgggacttgatt |
302 |
Q |
| |
|
||||||||||| | | || ||||||||| || ||||||||||| |||||||| ||||||| ||||||||||||| ||| || |||||| |
|
|
| T |
17850334 |
actctcgacatcctagagacagttcttcaagagcagtgagtgtgtccattcgaagcttgactttaagagatccaattgagtaatgagatttgatt |
17850428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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