View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_46 (Length: 426)
Name: NF16091_high_46
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_46 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Original strand, 27320659 - 27321074
Alignment:
| Q |
11 |
tgagaagaaaaaagttttaatagtgagtccaagtgtgaattttgatggtatgaaccggactccggttcggtccatgtcagtggggtttgggtttatgaga |
110 |
Q |
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| T |
27320659 |
tgagaagaaaaaagttttaatagtgagtccaagtgtgaattttgatggtatgaaccggactcccgttcggtccatgtcagtggggtttgggtttatgaga |
27320758 |
T |
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| Q |
111 |
ttgttttctcggtctaaatcaacgggtcaattaatggttcggtcggatgaggattgtgagcggttcacgttgagattgccggatgaagtgcataatcgat |
210 |
Q |
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| T |
27320759 |
ttgttttctcggtctaaatcaacgggtcaattaatggttcggtcggatgaggattgtgagcggttcacgttgagattgccggatgaagtgcataatcgat |
27320858 |
T |
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| Q |
211 |
taatgaatgatatcacgttgcgccaaacaaagacttgggatgctacattacgtagtgggaaaaggggttaccgaacaaggagtgtggggaggaactttct |
310 |
Q |
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| T |
27320859 |
taatgaatgatatcacgttgcgccgaacaaagacctgggaagctacattaggtagtgggaaaaggggttaccgaacaaggagtgtggggaggaactttct |
27320958 |
T |
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| Q |
311 |
acaatatgagcggttcaatgtggagagccggctggaccaaaaagggttcacgtgtgccccgtcttttttgggccgggttggttcgatgagatcaacaaag |
410 |
Q |
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| T |
27320959 |
acaatatgagcggttcaatgtggagagccggctggaccaaaaagggttcacgtgtgccccatcttttttgggccgggttggttcgatgagatcaacaaag |
27321058 |
T |
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| Q |
411 |
gatgggaacaatgcaa |
426 |
Q |
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| T |
27321059 |
gatgggaacaatgcaa |
27321074 |
T |
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