View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_high_50 (Length: 412)
Name: NF16091_high_50
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 7909192 - 7908810
Alignment:
| Q |
20 |
ataatcacatagtaatgttattgtgattgtatgtatgtctcttagaatttagtttcttacttttatggttgtacggattttgttttttgattgagtttgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7909192 |
ataatcacatagtaatgttattgtgattgtatgtatgtctcttagaatttagtttcttacttttatggttgtacggattttgtgttttgattgagtttgt |
7909093 |
T |
|
| Q |
120 |
ttgattcaatttgccgacaatacaaaaaacattagtttgatatttgattggttctgttggagaattctagtttggttggttgatctagttggttgtgaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7909092 |
ttgattcaatttgccgacaatacaaaaaacattagtttgatatttgattggttctgttggagaattctagtttggttggttgatctagttggttgtgaaa |
7908993 |
T |
|
| Q |
220 |
atttggattgttcttgttggaaataatatggctaacgaaggaaacaaaagcaatgatttctatgcagttttgggattgaataaggaatgctctgattcag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7908992 |
atttggattgttcttgttggaaataatatggctaacgaaggaaacaaaagcaatgatttctatgcagttttgggattgaataaggaatgctctgattcag |
7908893 |
T |
|
| Q |
320 |
agctaaggaatgcttataagaaacttgcactggttagaaatgcttatattttctataatctttttctttctacaccgtctctg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7908892 |
agctaaggaatgcttataagaaacttgcactggttagaaatgcttatactttctataatctttttctttctacaccgtctctg |
7908810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University