View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_54 (Length: 394)
Name: NF16091_high_54
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_54 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 46666919 - 46666537
Alignment:
| Q |
18 |
agaaaaaacaagcataatattctaacaatcaaaccaaaatgttaacagcttatatatacaatataatttgtagaaaaagcctatgcagaaattaaatgta |
117 |
Q |
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| T |
46666919 |
agaaaaaacaagcataatattctaacaatcaaaccaaaatgttaacagcttatatatacaatataatttgtagaaaaagcctatgcagaaattaaatgta |
46666820 |
T |
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| Q |
118 |
tagtagtaccttgcttatttctccattagcgacagttgaattgttgatgctcttaaaaagctctgctaatgcttcaacatcattgtgagagtctggaaaa |
217 |
Q |
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| T |
46666819 |
tagtagtaccttgcttatttctccattagcgacagttgaattgttgatgctcttaaaaagctctgctaatgcttcaacatcattgtgagagtctggaaaa |
46666720 |
T |
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| Q |
218 |
ccaaaaatttgtacgcaagtttatttaaactacaaaactgtctagcaaaaataactcacaatct--------tatatatatcatagaaatatacaagaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
46666719 |
ccaaaaatttgtacgcaagtttatttaaactacaaaactgtctagcaaaaataact--caatcttatatatatatatatatcatagaaatatacaagaat |
46666622 |
T |
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| Q |
310 |
taattaaagcttaattaacataatctaattggattaaccgatagacatacaagcagtctgtgatgcaagaattgccggatcctcc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46666621 |
taattaaagcttaattaacataatctaattggattaaccgatagacatacaagcagtctgtgatgcaagaattgccggatcctcc |
46666537 |
T |
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