View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_58 (Length: 391)
Name: NF16091_high_58
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_58 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 73 - 365
Target Start/End: Original strand, 41479139 - 41479431
Alignment:
| Q |
73 |
attacatcatacatttcctaccttattcttttatgggtttatcccctctttcttatcgggacaagagaatcatacataaagaagaaattgcatcaaaacc |
172 |
Q |
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| T |
41479139 |
attacatcatacatttcctaccttattcttttatcggtttatcccctctttcttatcgggacaagagaatcatacataaagaagaaattgcatcaaaacc |
41479238 |
T |
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| Q |
173 |
taatcatcatattctttatcggttttatttgaattactttacnnnnnnnnnnnttaaaatccaaatcaaacaaatttgatgcaccgtannnnnnngtttg |
272 |
Q |
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| T |
41479239 |
taatcatcatattctttatcggttttatttgaattactttacaaaaaaaaaaattaaaatccaaatcaaacaaatttgatgcaccatatttttttgtttg |
41479338 |
T |
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| Q |
273 |
attaggaagctaaagagaaaggaaaaaagaaggacacaattaagctctaaggaaccatgtttatatagagtctgcagagagaaggtccatgat |
365 |
Q |
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| T |
41479339 |
attaggaagctaaagagaaaggaaaaaagaaggacacaattaagctctaaggaaccatgtttatatagagtctgcagagagaaggttcatgat |
41479431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 41479102 - 41479138
Alignment:
| Q |
8 |
cgaagaaaatattaatcagaagaaaaatgaaaatgag |
44 |
Q |
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| T |
41479102 |
cgaagaaaatattaatcagaagaaaaatgaaaatgag |
41479138 |
T |
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