View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_6 (Length: 654)
Name: NF16091_high_6
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_6 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 10 - 643
Target Start/End: Original strand, 38935182 - 38935815
Alignment:
| Q |
10 |
catcatcatctctaacaccaccactccaaaactatacacatcacacttttctgtcaccctcatagtttgtgctagctctgcaaaatccaaaattaaaact |
109 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38935182 |
catcattatctccaacaccaccactccaaaactatacacatcacacttttctgtcaccctcatagtttgtgctagctctgcaaaatccaaaattaaaact |
38935281 |
T |
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| Q |
110 |
ttgttactaaataaatgagtcacgttcaggtccagatattataagttgtagatttaaatactcaaataaaaaatgctactacggcacataatatgtatta |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38935282 |
ttgttactaagtaaatgagtcacgttcaggtccagatattataagttgtagatttaaatactcaaataaaaaatgctactacggcacataatatgtatta |
38935381 |
T |
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| Q |
210 |
tatctaatgaactatgaaactgttgataatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38935382 |
tatctaatgaactatgaaactgttgataatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcg |
38935481 |
T |
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| Q |
310 |
aattgttagagcttagcagctttgcagtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcac |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38935482 |
aattgttagagtttagcagctttgcagtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcac |
38935581 |
T |
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| Q |
410 |
aattggtggagagcaatcactatgcaggtaagcgattgcatgagctattccttgcacaattttcacccttgcactccaacttagctccaattttccttct |
509 |
Q |
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| T |
38935582 |
aattgctggagagcaatcactatgcaggtaagcgattgcatgagctattccttgcacaatttccacccttgcactccaacttagctccaattttccttct |
38935681 |
T |
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| Q |
510 |
cctccatacaacacttttcccaagcttcctttctctacatgttcataaaccaggaacatttgtctcctcatagaacagaaaccataaagctttattatat |
609 |
Q |
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| T |
38935682 |
cctccatacaacacttttcccaagcttcctttctctacatgttcataaaccaggaacatttgtctcctcatagaacagaaaccataaagctttattatat |
38935781 |
T |
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| Q |
610 |
tccggtgcctcacttctgttagcgttcttctctc |
643 |
Q |
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| T |
38935782 |
tccggtgcctcacttctgttagcgttcttatctc |
38935815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 235 - 413
Target Start/End: Original strand, 10088 - 10264
Alignment:
| Q |
235 |
ataatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgc |
334 |
Q |
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| T |
10088 |
ataatctcaatcattaaatacattgtgtacttggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaagcttagcaacttgat |
10187 |
T |
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| Q |
335 |
agtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
413 |
Q |
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| T |
10188 |
agtg--aaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatt |
10264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 262 - 413
Target Start/End: Original strand, 22902386 - 22902535
Alignment:
| Q |
262 |
tacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaagatgaggtac |
361 |
Q |
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| T |
22902386 |
tacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttagcaatttgatagtg--aaaatctgtaagatgtggtac |
22902483 |
T |
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| Q |
362 |
ataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
413 |
Q |
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| T |
22902484 |
ataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatt |
22902535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 257 - 413
Target Start/End: Original strand, 26662125 - 26662279
Alignment:
| Q |
257 |
ttgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgcagtgccaaaatctgcaagatga |
356 |
Q |
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| T |
26662125 |
ttgtgtatctagaaccatgtagccataggatacatcaactgagctcctagttgtattgttaaagcttagtaacttgatagtg--aaaatctgcaagatgt |
26662222 |
T |
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| Q |
357 |
ggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
413 |
Q |
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| T |
26662223 |
ggtacataatctaagtcaagtagtatgatgttcaatgttacatctttgtgcataatt |
26662279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 413
Target Start/End: Original strand, 19702441 - 19702513
Alignment:
| Q |
341 |
aaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
413 |
Q |
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| T |
19702441 |
aaaatctgcaagatgtggtacataatctaagacaagtagtatgatgttcaatgttatatctctgtgcacaatt |
19702513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 19701662 - 19701758
Alignment:
| Q |
237 |
aatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttg |
333 |
Q |
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| T |
19701662 |
aatctcaatcattaaatacattgtgtacctggaaccatgtagtaatagcatacaacaactgagctcctagttgtattgttaaagcttagcaactttg |
19701758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 235 - 375
Target Start/End: Original strand, 10638135 - 10638272
Alignment:
| Q |
235 |
ataatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgc |
334 |
Q |
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|||||||||||| |||| ||||||||||||||||| || |||||||||||||| | |||||||| ||| ||| | ||||||| | ||||||| || |
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| T |
10638135 |
ataatctcaatcattaa-tgcattgtgtacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttagcaatttgat |
10638233 |
T |
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| Q |
335 |
agtgccaaaatctgcaagatgaggtacataatctgagtcaa |
375 |
Q |
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| T |
10638234 |
agtg--aaaatctgcaagatgtggtacataatctaagtcaa |
10638272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 375
Target Start/End: Complemental strand, 32717477 - 32717339
Alignment:
| Q |
235 |
ataatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagcttagcagctttgc |
334 |
Q |
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|||||||||||| |||||| ||||||||||||||| || |||||||||||||| | ||| |||| ||| ||| | ||||||| |||||| || ||| |
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| T |
32717477 |
ataatctcaatcattaaatacattgtgtacctggaaccgtgtagccataggatacaacaattgagctcctagttgtattgttaaagcttaacaacttgat |
32717378 |
T |
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| Q |
335 |
agtgccaaaatctgcaagatgaggtacataatctgagtcaa |
375 |
Q |
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|||| | ||| ||||||||| |||||||||||| |||||| |
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| T |
32717377 |
agtg--agaatatgcaagatgtggtacataatctaagtcaa |
32717339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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