View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_63 (Length: 378)
Name: NF16091_high_63
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 30184579 - 30184859
Alignment:
| Q |
7 |
actacatctctgatagcaagattaacacctttttgaacatgaattttgagaagtcccaataaattctccatgaacacagaatgtgttagaaaattcaaca |
106 |
Q |
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| T |
30184579 |
actacatctctgatagcaagattaacacctctttgaacatgaattttgagaagtcccaataaattctccatgaacacagaatgtgttagaaaattcaaca |
30184678 |
T |
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| Q |
107 |
gtgttgattttcagatggaaaacgtgatgacaggaacctctgaccaatgtgcatatacttatactcatttgtaatataagatatgattatgatgnnnnnn |
206 |
Q |
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| T |
30184679 |
gtgttgattttcagatagaaaacgtgatgacaggaacctctgaccaatgtgcatatacttatacttatttgtaatataagatatgattatgatgtttttt |
30184778 |
T |
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| Q |
207 |
nnnngtcctttctttattgcaaaaaggggtctagacgaagtgttatttttattggcctgccatatcattcattcaaaaata |
287 |
Q |
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| T |
30184779 |
ttttgtcctttctttattgcaaaaaggggtctagaagaagtggtatttttattggcctgccatatcattcattcaaaaata |
30184859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 30184913 - 30184949
Alignment:
| Q |
342 |
gaaattctagaatgaattgatattcttaccattttaa |
378 |
Q |
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| T |
30184913 |
gaaattctagaatgaattgatattcttaccattttaa |
30184949 |
T |
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