View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_65 (Length: 374)
Name: NF16091_high_65
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_65 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 9456759 - 9457116
Alignment:
| Q |
1 |
aaaactagctacgcgggtaggcaacccccgtggtgtctctcattagaagcaaatgacgctcatctta-aaaattagtcataaccattaactcgctactga |
99 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9456759 |
aaaactagctacgcggttaggcaacccccgtggtgtctctcattagaaacaaatgacgctcatcttagaaaattagtcataaccattaactcgctactgg |
9456858 |
T |
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| Q |
100 |
atctagcatcaaacttggcaataaaatcaacacacgcgttcccttcacgcaacgtatgagaagtttaagactccaatctttagccatgtattgacaagta |
199 |
Q |
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|||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9456859 |
atctagcatcaagcttggcaatataatcaacacacgtgttcccttcacgcaacgtatgagaagtttaaggctccaatctttagccatgtattgacaagta |
9456958 |
T |
|
| Q |
200 |
acaactatctattgtcaaaatgatgtatagtaacgctagcactttgaaccattgaaatgtatgcttcaaattagtgtagcatatgatattacataaagct |
299 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9456959 |
acaactacctattgtcaaaatgatgtatagtaacgctagcactttgaaccattgaaatgtatgcttcaaattagtgtagcatatgatattatataaagct |
9457058 |
T |
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| Q |
300 |
tcttcacggcacatgtgaacgccctgcatcaaggctacaattaccacatgtaggatgt |
357 |
Q |
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||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| |
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| T |
9457059 |
tcttcacggcacatgtgaacgccctacatcaaagctacaatcaccacatgtaggatgt |
9457116 |
T |
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