View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_66 (Length: 373)
Name: NF16091_high_66
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_66 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 355
Target Start/End: Complemental strand, 39557707 - 39557352
Alignment:
| Q |
2 |
tataggaagaagggtaggcggtgatggcaagaggatcaaaacattaatttaacgtacatatatatat--tcttagttttgatattgatgatttggatttg |
99 |
Q |
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| T |
39557707 |
tataggaagaagggtaggcggtgatggcaagaggatcaaaacattaatttaacgtacatatatatatattcttagttttgatattgatgatttggatttg |
39557608 |
T |
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| Q |
100 |
gcatgataactactagaaaacatgtcattttcactataacagtgagaaatttgcatgcnnnnnnnnctaaggactgaacattatattcctccacctattc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39557607 |
gcatgataactactagaaaacatgtcattttcactataacagtgagaaatttgcatgcaaaaaaaactaaggactgaacattatattcctccacctattc |
39557508 |
T |
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| Q |
200 |
ttattcctgcttannnnnnnnnnnnnntccaaaatgttttttaagttcttttggagcactgtagtttttgtctgaaagctgaaaatttagccagctcatt |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39557507 |
ttattcctgcttaatatatatatatattccaaaatgttttttaagttcttttgaagcactgttgtttttgtctgaaagctgaaaatttagccagctcatt |
39557408 |
T |
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| Q |
300 |
tttatagtactttctgaaactatagtccccacaaccacgaggttcgtttgtttcta |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39557407 |
tttatagtactttctgaaactatagtccccacaaccacgaggttcgtttgtttcta |
39557352 |
T |
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