View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_68 (Length: 372)
Name: NF16091_high_68
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 27 - 354
Target Start/End: Complemental strand, 18345644 - 18345317
Alignment:
| Q |
27 |
attttcaccctcataaaacccaaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaa |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18345644 |
attttcaccctcataaaacccaaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaa |
18345545 |
T |
|
| Q |
127 |
acaaccacctcttcaacatctacgtccatgcagatcccaccacctatgttgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccac |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18345544 |
acaaccacctcttcaacatctacgtccatgcagatcccaccacctatgtcgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccac |
18345445 |
T |
|
| Q |
227 |
caaacgttactctccatcactcatcgctgctgcccgccgtctcctagcatctgccctcttagatgacccactgaaccaatactttgcacttatctcccaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18345444 |
caaacgttactctccatcactcatcgctgctgcccgccgtctcctagcatctgccctcttagatgacccactgaaccaatactttgcacttatctcccaa |
18345345 |
T |
|
| Q |
327 |
cgttgtattccgctcttctcatttcaat |
354 |
Q |
| |
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||||||||||| |||||||||||||||| |
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| T |
18345344 |
cgttgtattccactcttctcatttcaat |
18345317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 48 - 313
Target Start/End: Complemental strand, 18340466 - 18340200
Alignment:
| Q |
48 |
aaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatggg-aaaaattcttcgttggaaacaaccacctcttcaacatc |
146 |
Q |
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||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||| || |
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| T |
18340466 |
aaacctaaaatcgctttcctcttcctcaccaacaccaacctcacctttgctcctttatggggaaaaattcttcaccggaaacaaccatctcttcaatata |
18340367 |
T |
|
| Q |
147 |
tacgtccatgcagatcccaccacctatgttgcctcccccggcggtgtcttccaaaaccgtttcatcccttccaaacccaccaaacgttactctccatcac |
246 |
Q |
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||| |||||||||| |||||||||| || | |||||| |||||||||||||| |||||||||||| |||||||||| ||| ||||| ||| ||||||| |
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| T |
18340366 |
tacatccatgcagaccccaccacctccgtcgtctcccctggcggtgtcttccataaccgtttcatctcttccaaaccaacccaacgtgcctcaccatcac |
18340267 |
T |
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| Q |
247 |
tcatcgctgctgcccgccgtctcctagcatctgccctcttagatgacccactgaaccaatactttgc |
313 |
Q |
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||||| | |||||| | ||||| ||||| ||||| ||||||||||| || || |||||||||||||| |
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| T |
18340266 |
tcatctccgctgccagacgtcttctagcttctgcgctcttagatgatccgcttaaccaatactttgc |
18340200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 351
Target Start/End: Original strand, 18303237 - 18303543
Alignment:
| Q |
48 |
aaacccaaaatcgctttcctcttcctcaccaactctaacctcaccttcgctcctttatgggaaaaattcttcgttggaaacaaccacctcttcaacatct |
147 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| | ||| ||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||| |
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| T |
18303237 |
aaacccaaaatcgccttcctcttcctcacaaacaccaacttcacctttgctcctttgtgggaaatattctttactggaaacaaccacctcttcaacatct |
18303336 |
T |
|
| Q |
148 |
acgtccatgcagatcccaccacctatgttgcctcccccggcggtgtcttc---caaaaccgtttcatcccttccaaacccaccaaacgttactctccatc |
244 |
Q |
| |
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|| |||| ||||| || ||| ||| ||| ||||| || |||||| ||||||| ||||||||||||||| | || |||| |||||| | |
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| T |
18303337 |
acatccacgcagacccggtttcctctgtcctctcacccggaggcgtcttccatcaaaaccacttcatcccttccaaaacaactcaacgcgcctctccgac |
18303436 |
T |
|
| Q |
245 |
actcatcgctgctgcccgccgtctcctagcatctgccctcttagatgacccactgaaccaatactttgcactta-tctcccaacgttgtattccgctctt |
343 |
Q |
| |
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||| || || ||||| ||||||||| |||| |||| || || |||||||||| |||||||||||||| |||| ||||||||| ||||||||| ||||| |
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| T |
18303437 |
acttatagccgctgctcgccgtctcttagccactgctctattggatgacccacataaccaatactttgc-cttagtctcccaacattgtattccactctt |
18303535 |
T |
|
| Q |
344 |
ctcatttc |
351 |
Q |
| |
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||| |||| |
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|
| T |
18303536 |
ctcgtttc |
18303543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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