View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_69 (Length: 369)
Name: NF16091_high_69
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_69 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 14728176 - 14728385
Alignment:
| Q |
1 |
ttccttttttcctttactcctatgaggctacagctcacatcattactgctgaacggtgaacaatatatggggttttccatttatttttccaaacatattg |
100 |
Q |
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| T |
14728176 |
ttccttttttcctttactcctatgaggctacagctcacatcattactgctgaacggtgaacaatatatggggttttccatttatttttccaaacatattg |
14728275 |
T |
|
| Q |
101 |
taggaactttttccatagggactgttaatgctcataaatctagattccttggtaagattctgtgtattaggcttaaaaattgtagctacttttcttgaga |
200 |
Q |
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| T |
14728276 |
taggaactttttccatagggactgttaatgctcataaatctagattccttggtaagattctgtgtattaggcttaaaaattgtagctacttttcttgaga |
14728375 |
T |
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| Q |
201 |
agatgcatgc |
210 |
Q |
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|||||||||| |
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| T |
14728376 |
agatgcatgc |
14728385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 267 - 369
Target Start/End: Original strand, 8798096 - 8798198
Alignment:
| Q |
267 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttacctactactactatgctgatgatgatgaatatattgg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8798096 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttacctactactactatgctgatgatgatgaatatattgg |
8798195 |
T |
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| Q |
367 |
gga |
369 |
Q |
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||| |
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| T |
8798196 |
gga |
8798198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 13955611 - 13955476
Alignment:
| Q |
74 |
tttccatttatttttccaaacatattgtaggaactttttccatagggactgtta-atgctcataaatctagattccttggtaagattctgtgtattaggc |
172 |
Q |
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|||||||||| ||||| ||||||||| | |||||||||||||||||| |||| ||||||||||| |||||||||| |||||||| ||||||||||| |
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| T |
13955611 |
tttccatttaattttcagaacatattg-atgaactttttccatagggatcgttagatgctcataaaagtagattcctttgtaagattttgtgtattagga |
13955513 |
T |
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| Q |
173 |
ttaaaaattgtagctacttttcttgagaagatgcatg |
209 |
Q |
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|||||| | ||||| |||||||||||||||| |||| |
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| T |
13955512 |
ttaaaattcatagctgcttttcttgagaagattcatg |
13955476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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