View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_71 (Length: 348)
Name: NF16091_high_71
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 36283956 - 36284278
Alignment:
| Q |
18 |
catgttgcaggtgcttacttatgcttgtctagaatttccaacatttaacaatttgggttatctacaattatatttaaaaacctttaactcacattttcta |
117 |
Q |
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| T |
36283956 |
catgttgcaggtgcttacttatgcttgtctagaatttccaacatttaacaatttgggttatctacaattatatttaaaaacctttaactcacattttcta |
36284055 |
T |
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| Q |
118 |
gttaaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggtttactcttgagatttggttaattatcggttaactttttta |
217 |
Q |
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| T |
36284056 |
gttaaactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggtttactcttgagatttggttaattatcggttaactttttta |
36284155 |
T |
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| Q |
218 |
atttactttctttttctcaagacaa-tatagatgttttgtgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaaca |
316 |
Q |
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| T |
36284156 |
atttactttctttttctcatgacaattatagatgttttgtgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaaca |
36284255 |
T |
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| Q |
317 |
atagttcctagctgtctttcatc |
339 |
Q |
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| T |
36284256 |
atagttcctagctgtctttcatc |
36284278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 22 - 339
Target Start/End: Original strand, 34554824 - 34555142
Alignment:
| Q |
22 |
ttgcaggtgcttacttatgcttgtctagaatttccaacatttaacaatttgggttatctacaattatatttaaaaacctttaactcacattttctagtta |
121 |
Q |
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| T |
34554824 |
ttgcaggtgcttacttatgcttgtctagaatttccaacatttgatcatttgggtcatctacaattatatttaaaaatccttgattcatattttctagttg |
34554923 |
T |
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| Q |
122 |
aactgttactagaaaaatgccccaatcttgatgttcttgagattattaaggttggtttactcttgagatttggttaattatcggttaacttttttaattt |
221 |
Q |
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| T |
34554924 |
agttgttgctagaaaaatgccccaatctagaatttctagagattatcaaggttagttaactcttgagatttagctaattatttcttgaatttttattttt |
34555023 |
T |
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| Q |
222 |
actttctttttctcaagacaa-tatagatgttttgtgatctcttttgacaggttgatgacctatgcgataatgaaattaaatgggcagaaccaacaatag |
320 |
Q |
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| T |
34555024 |
actttgtttcattggatacaattatagttgtgttgtgacctcacttgacaggttgatgaactatgtgataatgaaattgaatggagacaaccaacaatag |
34555123 |
T |
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| Q |
321 |
ttcctagctgtctttcatc |
339 |
Q |
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| T |
34555124 |
ttcctagctgtctttcatc |
34555142 |
T |
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