View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_75 (Length: 333)
Name: NF16091_high_75
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_75 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 80 - 299
Target Start/End: Original strand, 42293319 - 42293538
Alignment:
| Q |
80 |
ctgttaatttatatttgaataccaacaatctcttcatcaagtatgaatatataacatcactataattagctcaaataccatgaccccactcttgatccct |
179 |
Q |
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| T |
42293319 |
ctgttaatttattcttgaataccaacaatctctccatcaaatgtgaatatatcacatcactataattagctcaaataccatgaccccactcttgatccct |
42293418 |
T |
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| Q |
180 |
tgctaagccaaactaaagctttgataccacttgttagggagttcgagcatcaggagcaacaatgaatattatgatgtggtattaataagagatcatgaca |
279 |
Q |
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| T |
42293419 |
tatcaagccaaactaaggctttaataccacttgttagagagttcgagcatcaggagcaacaatgaatattatgatgtggtattaacaagagatcatgaca |
42293518 |
T |
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| Q |
280 |
ccacatccaaacctaaaacc |
299 |
Q |
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| T |
42293519 |
ccacatccaaacctaaaacc |
42293538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 292
Target Start/End: Complemental strand, 42164080 - 42163972
Alignment:
| Q |
184 |
aagccaaactaaagctttgata--ccacttgttagggagttcgagcatcaggagcaacaatgaatattatgatgtggtattaataagagatcatgacacc |
281 |
Q |
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| T |
42164080 |
aagccgaactaaggctttgatataccacttgttaggatgtttgagcatcaggagcaacaaagaat-taatgat-ttgtattatcaagagatcgtgacact |
42163983 |
T |
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| Q |
282 |
acatccaaacc |
292 |
Q |
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| T |
42163982 |
acatctaaacc |
42163972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 27487236 - 27487285
Alignment:
| Q |
198 |
ctttgataccacttgttagggagttc----gagcatcaggagcaacaatg |
243 |
Q |
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| T |
27487236 |
ctttgataccacttgttagggagttcggcggagcgtcaggagcaacaatg |
27487285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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