View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_78 (Length: 329)
Name: NF16091_high_78
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 46985142 - 46985457
Alignment:
| Q |
1 |
acacattatggcctaacaagttacaactttaaacgattctaaaatttatttttgaataatacacaataccgtcacatataatcaatcacttccatttatt |
100 |
Q |
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| T |
46985142 |
acacattatggcctaacaagttacaacgttaaacgattctaaaatttatttttgaataatacacaataccgtcgcatataatcaatcacttccatttatt |
46985241 |
T |
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| Q |
101 |
ttaaatatttatgggtgactaagtgtcggtgtttggtgtatgtgttagggtttaatagataaaaaataacaaaagcataacatcaattgagttgaaaaca |
200 |
Q |
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| T |
46985242 |
ttaaatatttatgggtgactaagtgtcggtgttcggtgtatgtgttagtgtttaatagataaaaaataacaaaagcataacatcaattgagttgaaaaca |
46985341 |
T |
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| Q |
201 |
ctaacatcaagcatatgatcaagaaagggaattccagaactgttatcagcaaccccagttccatccaagttaattttgactgatacattagtttccttgg |
300 |
Q |
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| T |
46985342 |
ctaacatcaagcatatgatcaagaaagggaattccagaactgttatcagcaaccccagttccatccaagttaattttgactgatacattagtttccttgg |
46985441 |
T |
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| Q |
301 |
tgacccttttcatctc |
316 |
Q |
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| T |
46985442 |
tgacccttttcatctc |
46985457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 31685386 - 31685468
Alignment:
| Q |
185 |
aattgagttgaaaacactaacatcaagcatatgatcaagaaagggaattccagaactgttatcagcaaccccagttccatcca |
267 |
Q |
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| T |
31685386 |
aattgagttgaaaatactgacataaggcatatgatcaaggaaagaaactcgagaactagcatcagctaccccagttccatcca |
31685468 |
T |
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