View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_80 (Length: 327)
Name: NF16091_high_80
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_80 |
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| [»] scaffold0781 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 106 - 307
Target Start/End: Original strand, 2215519 - 2215712
Alignment:
| Q |
106 |
tgcagagttgatgaagatgttaacataaacattatcaatttatcatgaacgtgttttgtcacgagaagaaatgaggtcgtaataggaggtaatgaaacgg |
205 |
Q |
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| T |
2215519 |
tgcagagtcgatgaagatgttaacataaacattat--------catgaacgtgttttgtcacgagaagaaatgaggtcgtaacaggaggtaatgaaacgg |
2215610 |
T |
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| Q |
206 |
catcgttgtgtgatatgcgcccattgttgttgaaaatattcaattttcaaaattataatacactatgaaaatattcgtaaaagaatagaaggacacaaca |
305 |
Q |
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| T |
2215611 |
catcgttgtgtgatatgcgcccattgttattgaaaatattcaattttcaaaattataatacactatgaaaatattcgtaaaagaatagaaggacacaaca |
2215710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 2215425 - 2215470
Alignment:
| Q |
12 |
aagaatatgaatactttctttctaactattaaactcaacatatacc |
57 |
Q |
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| T |
2215425 |
aagaatatgaatactttctttctaactattaaactcaacatatacc |
2215470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 1524379 - 1524295
Alignment:
| Q |
145 |
ttatcatgaacgtgttttgtcacgagaagaaatgaggtcgtaa-taggaggtaatgaaacggcatcgttgtgtgatatgcgcccattg |
231 |
Q |
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| T |
1524379 |
ttatcatgaacgtgttt-gtcacgagaagaaacgacgtcgtaacgaggaggcaatgaaacggcgtcgt--tgtgataagcgcccattg |
1524295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 2216980 - 2217033
Alignment:
| Q |
253 |
caaaattataatacactatgaaaatattcgtaaaagaatagaaggacacaacac |
306 |
Q |
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| T |
2216980 |
caaaattgtaatatactataaaattatttgtaaaagaatacaaggacacaacac |
2217033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 106 - 307
Target Start/End: Original strand, 3976 - 4169
Alignment:
| Q |
106 |
tgcagagttgatgaagatgttaacataaacattatcaatttatcatgaacgtgttttgtcacgagaagaaatgaggtcgtaataggaggtaatgaaacgg |
205 |
Q |
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| T |
3976 |
tgcagagtcgatgaagatgttaacataaacattat--------catgaacgtgttttgtcacaaaaaaaaatgaggtcgtaacaggaggtaatgaaacgg |
4067 |
T |
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| Q |
206 |
catcgttgtgtgatatgcgcccattgttgttgaaaatattcaattttcaaaattataatacactatgaaaatattcgtaaaagaatagaaggacacaaca |
305 |
Q |
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| T |
4068 |
catcgttgtgtgatatgcgcccattgttattgaaaatattcaattttcaaaattataatacactatgaaaatattcgtaaaaaaataaaaggacacaaca |
4167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 3882 - 3927
Alignment:
| Q |
12 |
aagaatatgaatactttctttctaactattaaactcaacatatacc |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3882 |
aagaatatgaatactttctttctaactattaaactcaacatatacc |
3927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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