View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_87 (Length: 315)
Name: NF16091_high_87
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_87 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 40292436 - 40292594
Alignment:
| Q |
19 |
gttgattgatgataaattttagaaaaggctttataaaaatcgcaccattttatttcgtcttgtttttcagcaagtagaaatttttagagtgttttgtttc |
118 |
Q |
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| T |
40292436 |
gttgattgatgataaattctagaaaaggctttataaaaatcgcaccattttatttcgtcttgtttttcaacaagtagaaatttttagagtgttttgtttc |
40292535 |
T |
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| Q |
119 |
aagtgaagcatacnnnnnnnnngtggtgtatgaaaaattcttatggcagtttatatata |
177 |
Q |
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| T |
40292536 |
aagtgaagcatacttttttttggtggtgtatgaaaaattcttatggcagtttatatata |
40292594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 40292641 - 40292754
Alignment:
| Q |
185 |
gtcttagaagaagtggtaaactcacaaacaactataagattttggattacgacgtccggccttacaattttgacatttatcggttgagttagaatttcta |
284 |
Q |
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| T |
40292641 |
gtcttagaagaagtggtaaattcacaaacaactatgaggttctaggttacgacgtccgaccttacaattttgacatttatcagttgagttagaacttcta |
40292740 |
T |
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| Q |
285 |
aattatcaatttat |
298 |
Q |
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||| ||| ||||| |
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| T |
40292741 |
gattgtcagtttat |
40292754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 448944 - 448988
Alignment:
| Q |
228 |
ggattacgacgtccggccttacaattttgacatttatcggttgag |
272 |
Q |
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| T |
448944 |
ggatcacgacgtccggccttacaattttgacatttgtcagttgag |
448988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 24619153 - 24619196
Alignment:
| Q |
233 |
acgacgtccggccttacaattttgacatttatcggttgagttag |
276 |
Q |
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| T |
24619153 |
acgacgttcggccttacaattttgacatttgtcagttgagttag |
24619196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 34305711 - 34305750
Alignment:
| Q |
233 |
acgacgtccggccttacaattttgacatttatcggttgag |
272 |
Q |
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| T |
34305711 |
acgacgtccggccttgaaattttgacatttatcggttgag |
34305750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 20269628 - 20269575
Alignment:
| Q |
201 |
taaactcacaaacaactataagattttggattacgacgtccggccttacaattt |
254 |
Q |
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| T |
20269628 |
taaactcacacacaactgtgagatcttggatcacaacgtccggccttacaattt |
20269575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 21056257 - 21056204
Alignment:
| Q |
201 |
taaactcacaaacaactataagattttggattacgacgtccggccttacaattt |
254 |
Q |
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|||||||||| |||||| | |||| |||||| || ||||||||||||||||||| |
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| T |
21056257 |
taaactcacacacaactgtgagatcttggatcacaacgtccggccttacaattt |
21056204 |
T |
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