View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_high_9 (Length: 623)

Name: NF16091_high_9
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_high_9
NF16091_high_9
[»] chr7 (13 HSPs)
chr7 (12-481)||(35720593-35721057)
chr7 (511-598)||(35721054-35721141)
chr7 (392-521)||(30824908-30825039)
chr7 (362-492)||(23797680-23797809)
chr7 (365-489)||(4232722-4232845)
chr7 (374-490)||(31188737-31188853)
chr7 (374-489)||(5000332-5000448)
chr7 (374-493)||(43189797-43189917)
chr7 (380-483)||(27088305-27088409)
chr7 (380-483)||(27189892-27189996)
chr7 (398-445)||(8055059-8055106)
chr7 (375-434)||(36595376-36595435)
chr7 (524-570)||(47300347-47300393)
[»] chr8 (11 HSPs)
chr8 (359-527)||(44711425-44711592)
chr8 (374-527)||(471962-472114)
chr8 (374-493)||(17106165-17106282)
chr8 (374-522)||(29602023-29602167)
chr8 (363-490)||(14955218-14955344)
chr8 (405-490)||(42350414-42350499)
chr8 (431-522)||(36470656-36470747)
chr8 (374-451)||(20305708-20305785)
chr8 (374-451)||(21092341-21092418)
chr8 (390-441)||(26797866-26797917)
chr8 (374-457)||(42964783-42964865)
[»] chr5 (9 HSPs)
chr5 (359-525)||(1863087-1863252)
chr5 (374-490)||(6539798-6539914)
chr5 (374-490)||(4462558-4462674)
chr5 (394-489)||(6662073-6662169)
chr5 (381-437)||(12331851-12331907)
chr5 (405-484)||(14688753-14688832)
chr5 (374-451)||(19608773-19608850)
chr5 (371-440)||(41384731-41384800)
chr5 (524-568)||(8795206-8795250)
[»] chr1 (11 HSPs)
chr1 (359-525)||(2570953-2571117)
chr1 (374-514)||(1411678-1411817)
chr1 (364-493)||(28765518-28765646)
chr1 (374-481)||(15280480-15280587)
chr1 (363-441)||(49899079-49899156)
chr1 (374-451)||(3852832-3852909)
chr1 (389-450)||(5173050-5173111)
chr1 (362-451)||(36995270-36995358)
chr1 (400-451)||(34620656-34620707)
chr1 (380-450)||(10483271-10483341)
chr1 (374-440)||(31963039-31963105)
[»] chr3 (10 HSPs)
chr3 (392-523)||(31830154-31830285)
chr3 (374-490)||(36473116-36473232)
chr3 (417-524)||(30374671-30374778)
chr3 (377-490)||(42983873-42983986)
chr3 (405-484)||(39818842-39818921)
chr3 (414-472)||(48600645-48600703)
chr3 (525-570)||(26716376-26716421)
chr3 (359-451)||(31375484-31375575)
chr3 (389-493)||(31844946-31845050)
chr3 (368-428)||(46665662-46665721)
[»] chr4 (9 HSPs)
chr4 (374-522)||(51277950-51278099)
chr4 (374-533)||(14193802-14193961)
chr4 (374-509)||(24970952-24971087)
chr4 (362-451)||(38868828-38868916)
chr4 (374-490)||(53333546-53333662)
chr4 (374-490)||(26683635-26683751)
chr4 (377-428)||(36363572-36363623)
chr4 (413-490)||(21240162-21240239)
chr4 (525-570)||(47739047-47739092)
[»] chr6 (7 HSPs)
chr6 (366-492)||(21273662-21273788)
chr6 (374-490)||(3686792-3686908)
chr6 (362-501)||(24093780-24093917)
chr6 (374-490)||(10228310-10228425)
chr6 (393-441)||(31535682-31535730)
chr6 (374-428)||(30326671-30326725)
chr6 (377-445)||(342948-343016)
[»] chr2 (6 HSPs)
chr2 (405-490)||(41284593-41284678)
chr2 (404-489)||(4640213-4640298)
chr2 (374-490)||(41311694-41311810)
chr2 (374-451)||(752188-752265)
chr2 (382-490)||(12880090-12880198)
chr2 (374-437)||(40867917-40867980)
[»] scaffold0268 (1 HSPs)
scaffold0268 (382-444)||(19158-19220)
[»] scaffold0495 (1 HSPs)
scaffold0495 (374-451)||(5029-5106)
[»] scaffold0019 (1 HSPs)
scaffold0019 (378-439)||(48435-48496)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 481
Target Start/End: Original strand, 35720593 - 35721057
Alignment:
Q  12 attatactgttcaatttgttattgtgaagataaatattaatttagtaaaagtcacgttttctttcttttatttatacactttaaatttgtatgaattaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35720593 attatactgttcaatttgttattgtgaagataaatattaatttagtaaaagtcacgttttctttcttttatttatacactttaaatttgtatgaattaat 35720692  T
Q  112 catatttgtgactcatcgtaaagcagagagaatataacaagagaaattcaataatgttatttgattatgagtatgttgtgaaatacatgtatttcatctc 211  Q
    ||||||||| ||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35720693 catatttgtcactcatcgtaaagcag-------------agagaaattcaataatgttatttgattatgagtatgttgtgaaatacatgtatttcatctc 35720779  T
Q  212 ttagctagcattaagagaaaatatatgtnnnnnnnnggttaaaaacacaatctcttccgattgttgtcactcctcaataaagggaaccaaaaacattaaa 311  Q
    |||||||  |||||||||||||||||||         ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35720780 ttagctacgattaagagaaaatatatgtaaaaaaa--gtttaaaacacaatctcttccgattgttgtcactcctcaataaagggaaccaaaaacattaaa 35720877  T
Q  312 atg-nnnnnnnagaaaaataaactta----aacttatgggaaatgttaa------cttttggggcacttgttaaagaagtttaaaaaggaaattttattt 400  Q
    |||        |||||||||||||||    |  ||||||||||||||||      ||||||||||||||||| ||||||||||||||| |||||||||||    
T  35720878 atgttttttttagaaaaataaacttatattattttatgggaaatgttaacgagtgcttttggggcacttgtt-aagaagtttaaaaagaaaattttattt 35720976  T
Q  401 tgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaa 481  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||    
T  35720977 tgggaatgatgcattcaacatattgaaagtttaaaaagtaactttatctacataaaatttgtaaactatttttatatttaa 35721057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 511 - 598
Target Start/End: Original strand, 35721054 - 35721141
Alignment:
Q  511 ttaataagacccttattttattaatcaaaatgtgtttaatacaatttagtatatcaaccaggatttggattccagctcaaccaggatt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | | |||||| ||||||    
T  35721054 ttaataagacccttattttattaatcaaaatgtgtttaatacaatttggtatatcaaccaggatttgaatactaactcaactaggatt 35721141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 392 - 521
Target Start/End: Original strand, 30824908 - 30825039
Alignment:
Q  392 attttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaact 491  Q
    |||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||| | | ||| ||||||| ||||||||||||| |||| ||||||    
T  30824908 atttaattttggaaatgatgtattcaacacattgaaaatttaaaaagtaactttatctgcataaaacttgtaaattatttctatatttgaatctttaact 30825007  T
Q  492 agaacc--ctaaagacattggttaataagacc 521  Q
    ||  ||  |||| | |||||||||||||||||    
T  30825008 agtgccctctaagggcattggttaataagacc 30825039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 362 - 492
Target Start/End: Original strand, 23797680 - 23797809
Alignment:
Q  362 gggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttg 461  Q
    ||||||||||||| |||||||||| || ||||||||| |||||||||||| |||||| ||||| ||| |||||||||||| ||| ||||| | ||||||     
T  23797680 gggcacttgttaa-gaagtttaaagagaaaattttatcttgggaatgatgtattcaatacattaaaaatttaaaaagtaattttttctacctaaaattta 23797778  T
Q  462 taaactatttctatatttaaatccttaacta 492  Q
    |||| || |||||| ||| |||| |||||||    
T  23797779 taaattacttctatttttgaatctttaacta 23797809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 489
Target Start/End: Original strand, 4232722 - 4232845
Alignment:
Q  365 cacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaa 464  Q
    |||||||||| ||||||||||||  ||||||||| ||  |||||||| ||||||||||||||||||||||||||||| ||||||||  | ||| ||||||    
T  4232722 cacttgttaa-gaagtttaaaaataaaattttatcttaagaatgatgtattcaacacattgaaagtttaaaaagtaattttatctatataaaacttgtaa 4232820  T
Q  465 actatttctatatttaaatccttaa 489  Q
    | ||||| |||| || |||| ||||    
T  4232821 attatttttataattgaatctttaa 4232845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 374 - 490
Target Start/End: Complemental strand, 31188853 - 31188737
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||||||||||||| |||| | |||  |||||||||||||| ||||||||||||||||||||||| || ||||| | ||| || |||| ||||| |    
T  31188853 aagaagtttaaaaaggaagttttgtcttgaaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattttt 31188754  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||| ||||||    
T  31188753 atttttaaattcttaac 31188737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 489
Target Start/End: Original strand, 5000332 - 5000448
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaac-tttatctacgtgaaatttgtaaactatttc 472  Q
    ||||||| ||||| |||| |||| | |||| |||||||||||||| ||||||||||||||||||||||| ||| | ||| | ||| || |||| ||||||    
T  5000332 aagaagtctaaaatggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacatttttttacataaaacttataaattatttc 5000431  T
Q  473 tatatttaaatccttaa 489  Q
    ||| |||||||||||||    
T  5000432 tatttttaaatccttaa 5000448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 493
Target Start/End: Original strand, 43189797 - 43189917
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaac-tttatctacgtgaaatttgtaaactatttc 472  Q
    |||||||||| | |||||||||||| ||| |||||||| | |||| ||||||||| ||||||||||||| ||| | ||| | |||||| |||| || |||    
T  43189797 aagaagtttacataggaaattttatcttgagaatgatgtagtcaatacattgaaaatttaaaaagtaacttttttttacataaaatttataaattacttc 43189896  T
Q  473 tatatttaaatccttaactag 493  Q
    ||| ||| |||| ||||||||    
T  43189897 tatttttgaatcgttaactag 43189917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 483
Target Start/End: Original strand, 27088305 - 27088409
Alignment:
Q  380 tttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaact-ttatctacgtgaaatttgtaaactatttctatatt 478  Q
    |||||||||||| |||| | |||| ||| || ||||||| |||||||||||||||||||||| | || ||||| | ||| || |||| ||||||||| ||    
T  27088305 tttaaaaaggaagttttgtcttggaaataatacattcaagacattgaaagtttaaaaagtaaatattttctacataaaacttataaaatatttctatttt 27088404  T
Q  479 taaat 483  Q
    |||||    
T  27088405 taaat 27088409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 483
Target Start/End: Complemental strand, 27189996 - 27189892
Alignment:
Q  380 tttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaact-ttatctacgtgaaatttgtaaactatttctatatt 478  Q
    |||||||||||| |||| | |||| ||| || ||||||| |||||||||||||||||||||| | || ||||| | ||| || |||| ||||||||| ||    
T  27189996 tttaaaaaggaagttttgtcttggaaataatacattcaagacattgaaagtttaaaaagtaaatattttctacataaaacttataaaatatttctatttt 27189897  T
Q  479 taaat 483  Q
    |||||    
T  27189896 taaat 27189892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 8055106 - 8055059
Alignment:
Q  398 ttttgggaatgatgcattcaacacattgaaagtttaaaaagtaacttt 445  Q
    ||||| ||| ||||||||||||| ||||||| ||||||||||||||||    
T  8055106 ttttgagaacgatgcattcaacatattgaaaatttaaaaagtaacttt 8055059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 434
Target Start/End: Original strand, 36595376 - 36595435
Alignment:
Q  375 agaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaa 434  Q
    |||||| |||| |||||||||| | |||| |||||||||||||| ||||| |||||||||    
T  36595376 agaagtctaaagaggaaattttgtcttggaaatgatgcattcaaaacattaaaagtttaa 36595435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 47300393 - 47300347
Alignment:
Q  524 tattttattaatcaaaatgtgtttaatacaatttagtatatcaacca 570  Q
    ||||| ||||||||||| ||||| ||||||||||||||| |||||||    
T  47300393 tatttcattaatcaaaacgtgttcaatacaatttagtatttcaacca 47300347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 359 - 527
Target Start/End: Complemental strand, 44711592 - 44711425
Alignment:
Q  359 ttggggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaat 458  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||  |||||||||||| |||||||||||||||| ||||||||| | |||     
T  44711592 ttggggcacttgttaa-gaagtttaaaaagaaaattttattttgggaatgatatattcaacacattaaaagtttaaaaagtaattttatctacataaaac 44711494  T
Q  459 ttgtaaactatttctatatttaaatccttaactagaaccctaaagacattggttaataagacccttatt 527  Q
    ||||||| |||||||||||||||||| ||||||||   ||||| || ||| ||||| ||||||||||||    
T  44711493 ttgtaaagtatttctatatttaaatctttaactagtgtcctaaggatattagttaacaagacccttatt 44711425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 374 - 527
Target Start/End: Complemental strand, 472114 - 471962
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||| |||||||| |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||    
T  472114 aagaaatttaaaaaagaaattttattt-ggaaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattatttct 472016  T
Q  474 atatttaaatccttaactagaaccctaaagacattggttaataagacccttatt 527  Q
    |||||||||| |||||||||  | ||||   |||||||||| ||||||| ||||    
T  472015 atatttaaattcttaactagtgctctaagagcattggttaacaagacccctatt 471962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 374 - 493
Target Start/End: Original strand, 17106165 - 17106282
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||||||||||||||||||||||| |||||  ||| | ||||||||||||||||||||||||||| ||||||||||| | ||| ||||||| || ||||    
T  17106165 aagaagtttaaaaaggaaattttatcttggg--tgaagtattcaacacattgaaagtttaaaaagttactttatctacataaaacttgtaaattacttct 17106262  T
Q  474 atatttaaatccttaactag 493  Q
    |||||| |||||||||||||    
T  17106263 atatttgaatccttaactag 17106282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 374 - 522
Target Start/End: Complemental strand, 29602167 - 29602023
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||||||||||||||||||||||| |    ||| ||| |||  ||| |||||||||||||||||||| ||||| ||| | ||| || |||| |||||||    
T  29602167 aagaagtttaaaaaggaaattttatct----aataatgtatttgacatattgaaagtttaaaaagtaaatttatttacataaaacttataaattatttct 29602072  T
Q  474 atatttaaatccttaactagaaccctaaagacattggttaataagaccc 522  Q
    |||||| ||||||||||||| ||||||| |||||||||||| |||||||    
T  29602071 atatttgaatccttaactagtaccctaaggacattggttaacaagaccc 29602023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 14955344 - 14955218
Alignment:
Q  363 ggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgt 462  Q
    |||||||||||| ||| |||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||   | ||| || |    
T  14955344 ggcacttgttaa-gaattttaaagaggaagttttatcttggaaatgatgcattcaacacattgaaagtttaaaaagtaactttttctttataaaacttct 14955246  T
Q  463 aaactatttctatatttaaatccttaac 490  Q
    ||  ||||||||| ||| ||||||||||    
T  14955245 aagttatttctatttttgaatccttaac 14955218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 405 - 490
Target Start/End: Original strand, 42350414 - 42350499
Alignment:
Q  405 aatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaac 490  Q
    |||||||||||||| ||||||||| |||||||||||| ||| ||||| | |||||| |||| |||||| || ||||||||||||||    
T  42350414 aatgatgcattcaagacattgaaaatttaaaaagtaaatttttctacataaaatttataaattatttccatttttaaatccttaac 42350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 431 - 522
Target Start/End: Complemental strand, 36470747 - 36470656
Alignment:
Q  431 ttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaactagaaccctaaagacattggttaataagaccc 522  Q
    ||||||||||||||||||||| | ||| ||||||| || |||||||||| |||||||||||||   ||||| ||||||| |||| |||||||    
T  36470747 ttaaaaagtaactttatctacataaaacttgtaaattacttctatatttgaatccttaactagtgtcctaaggacattgcttaacaagaccc 36470656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 20305708 - 20305785
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    |||||||||||||||||| |||||| ||||||| | || | |||  |||||||||||||||||||||| ||| |||||    
T  20305708 aagaagtttaaaaaggaagttttatcttgggaagggtgtactcataacattgaaagtttaaaaagtaagtttttctac 20305785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 21092341 - 21092418
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    |||||||||||||||||| |||||| ||||||| | || | |||  |||||||||||||||||||||| ||| |||||    
T  21092341 aagaagtttaaaaaggaagttttatcttgggaagggtgtactcataacattgaaagtttaaaaagtaagtttttctac 21092418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 26797866 - 26797917
Alignment:
Q  390 aaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaa 441  Q
    ||||||| |||||| | ||||||||| |||||||| ||||||||||||||||    
T  26797866 aaattttgttttggaactgatgcatttaacacattaaaagtttaaaaagtaa 26797917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 457
Target Start/End: Original strand, 42964783 - 42964865
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaa 457  Q
    ||||||||||||  ||||||||||| |||||| || || ||||||||||||||||  | ||||| ||||||| ||||| |||||    
T  42964783 aagaagtttaaagtggaaattttatcttgggattg-tgtattcaacacattgaaacatcaaaaaataactttttctacatgaaa 42964865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 359 - 525
Target Start/End: Original strand, 1863087 - 1863252
Alignment:
Q  359 ttggggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaat 458  Q
    |||| ||||||||||| ||||||||||||  ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| | |||     
T  1863087 ttggcgcacttgttaa-gaagtttaaaaaataaattttatcttggaaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaac 1863185  T
Q  459 ttgtaaactatttctatatttaaatccttaactagaaccctaaagacattggttaataagaccctta 525  Q
    ||||||| ||||||||||||| |||||||||||||  |||||| | ||||||| || ||||||||||    
T  1863186 ttgtaaattatttctatatttgaatccttaactagtgccctaagggcattggtaaacaagaccctta 1863252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 6539798 - 6539914
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||||||||| ||| |||| |||||  |||||||||||||| ||||||||||||||||||||||| || ||||| | ||| || |||| |||||||    
T  6539798 aagaagtttaaaaatgaagttttgttttgaaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttct 6539897  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||| ||||||    
T  6539898 atttttaaattcttaac 6539914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 4462558 - 4462674
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||||||| |||||||| |||| | |||| |||||||||||||| | ||||||||||||||||||||| || ||||| | ||| || |||| |||||||    
T  4462558 aagaagttttaaaaggaagttttgtcttggaaatgatgcattcaagatattgaaagtttaaaaagtaacattttctacataaaacttataaattatttct 4462657  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||| ||||||    
T  4462658 atttttaaattcttaac 4462674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 394 - 489
Target Start/End: Original strand, 6662073 - 6662169
Alignment:
Q  394 tttattttgggaatgatgcattcaa-cacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaa 489  Q
    ||||| ||| ||||||||||||||| |||||||||||||||| || ||||||| ||||| | |||||| |||| |||||| || ||| |||||||||    
T  6662073 tttatcttgagaatgatgcattcaaacacattgaaagtttaataaataactttttctacatcaaatttataaattatttcaatttttgaatccttaa 6662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 12331907 - 12331851
Alignment:
Q  381 ttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaa 437  Q
    ||||||| ||||||||||||||||| | |||||||||||||||| ||| || |||||    
T  12331907 ttaaaaaagaaattttattttgggattaatgcattcaacacattcaaacttgaaaaa 12331851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 484
Target Start/End: Original strand, 14688753 - 14688832
Alignment:
Q  405 aatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatc 484  Q
    |||||| |||||||||||||||||||||||||| ||| ||| | ||| | ||| || |||| ||||| ||| ||||||||    
T  14688753 aatgattcattcaacacattgaaagtttaaaaactaattttttttacataaaacttataaattatttttatttttaaatc 14688832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 19608773 - 19608850
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    |||||||| |||||||||| ||||| |||| | |  |  ||||||||||||||||  ||||||||||||||| |||||    
T  19608773 aagaagttcaaaaaggaaactttatcttggaatttgtctattcaacacattgaaacattaaaaagtaactttttctac 19608850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 41384731 - 41384800
Alignment:
Q  371 ttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagta 440  Q
    ||||| |||||||||||| || |||| | || | |||||| || ||||||| ||||||||||||||||||    
T  41384731 ttaaaaaagtttaaaaagaaagttttgtcttagaaatgatccaatcaacacgttgaaagtttaaaaagta 41384800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 568
Target Start/End: Complemental strand, 8795250 - 8795206
Alignment:
Q  524 tattttattaatcaaaatgtgtttaatacaatttagtatatcaac 568  Q
    ||||| |||||||||||| |||| ||||||| |||||||||||||    
T  8795250 tatttcattaatcaaaatatgttcaatacaaattagtatatcaac 8795206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 359 - 525
Target Start/End: Complemental strand, 2571117 - 2570953
Alignment:
Q  359 ttggggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaat 458  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||| ||||||| | |||     
T  2571117 ttgggacacttgttaa-gaagtttaaaaaggaaattttatcttgggaatgatgtattcaacacattgaaactttaaaaa-taactatatctacataaaac 2571020  T
Q  459 ttgtaaactatttctatatttaaatccttaactagaaccctaaagacattggttaataagaccctta 525  Q
    ||||||| ||||||||||||| |||||||||||||  |||||| | |||||||||| ||||| ||||    
T  2571019 ttgtaaattatttctatatttgaatccttaactagtgccctaagggcattggttaacaagactctta 2570953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 374 - 514
Target Start/End: Original strand, 1411678 - 1411817
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| || ||||    
T  1411678 aagaagtttaaaaaggaaattttatcttaggaatgatgtattcaacacattgaaagtttaaaaagtaa-tttatctacataaaacttgtaaattacttct 1411776  T
Q  474 atatttaaatccttaactagaaccctaaagacattggttaa 514  Q
    |||||| |||| ||||||||  || ||| ||||||||||||    
T  1411777 atatttgaatctttaactagtgccttaaggacattggttaa 1411817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 364 - 493
Target Start/End: Complemental strand, 28765646 - 28765518
Alignment:
Q  364 gcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgta 463  Q
    |||||||||||| ||||||||| || |||||||   || | ||||||| ||||||||||||||||||||||||||||| ||  ||| ||| |||||||||    
T  28765646 gcacttgttaaa-aagtttaaagagaaaattttgccttagaaatgatgtattcaacacattgaaagtttaaaaagtaatttattctgcgtaaaatttgta 28765548  T
Q  464 aactatttctatatttaaatccttaactag 493  Q
    || || |||||| ||| |||||||||||||    
T  28765547 aattacttctattttttaatccttaactag 28765518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 374 - 481
Target Start/End: Complemental strand, 15280587 - 15280480
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||||||||||||| |||||| || | ||||||||| |||| | |||||||||||||||| |||| || | ||| | |||||| |||| |||||||    
T  15280587 aagaagtttaaaaaggaagttttatcttagaaatgatgcactcaagatattgaaagtttaaaaaataacattttttacataaaatttataaattatttct 15280488  T
Q  474 atatttaa 481  Q
    || |||||    
T  15280487 atttttaa 15280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 49899156 - 49899079
Alignment:
Q  363 ggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaa 441  Q
    ||||||||||||| |||| ||||   |||| ||| |||||| |||||||||||||||||||||||| ||| ||||||||    
T  49899156 ggcacttgttaaa-aagtctaaagcagaaactttgttttggaaatgatgcattcaacacattgaaattttgaaaagtaa 49899079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 3852832 - 3852909
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    ||||| ||||||||| ||||||||| || ||||||||| ||||   | ||||||||||||||| |||| |||||||||    
T  3852832 aagaaatttaaaaagaaaattttatcttaggaatgatgtattcggtatattgaaagtttaaaaggtaaatttatctac 3852909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 389 - 450
Target Start/End: Original strand, 5173050 - 5173111
Alignment:
Q  389 gaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatcta 450  Q
    |||||||||| |||||| |||||||||||||| ||| ||| || ||||||||||||| ||||    
T  5173050 gaaattttatattgggattgatgcattcaacatattaaaacttgaaaaagtaactttttcta 5173111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 451
Target Start/End: Complemental strand, 36995358 - 36995270
Alignment:
Q  362 gggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    ||||||||||||| |||||  ||| | |||||||| |||||| |||| |||||||||  |||||||| |||| ||||||||||| |||||    
T  36995358 gggcacttgttaa-gaagtccaaagaagaaattttgttttggaaatggtgcattcaatgcattgaaattttataaagtaactttttctac 36995270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 34620707 - 34620656
Alignment:
Q  400 ttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    |||||| |||||||||||||||||||||| || ||||||||| ||| |||||    
T  34620707 ttgggattgatgcattcaacacattgaaacttgaaaaagtaattttttctac 34620656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 380 - 450
Target Start/End: Original strand, 10483271 - 10483341
Alignment:
Q  380 tttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatcta 450  Q
    |||||| ||||| |||| |||| | ||||||||||| || ||||||||||||| |||||||| ||| ||||    
T  10483271 tttaaagaggaagttttgttttagaaatgatgcatttaatacattgaaagttttaaaagtaattttttcta 10483341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 31963105 - 31963039
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagta 440  Q
    ||||||||||||| ||||||||| |||||| | |  || ||||||||||||||||  ||||||||||    
T  31963105 aagaagtttaaaatggaaattttgttttggaatttgtgtattcaacacattgaaacattaaaaagta 31963039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 392 - 523
Target Start/End: Complemental strand, 31830285 - 31830154
Alignment:
Q  392 attttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaact 491  Q
    ||||||| ||| |||||||  ||||||||||||||||||||||||||||||||| ||||| | ||| ||||||| ||||||||||||| |||||||||||    
T  31830285 attttatcttgcgaatgatatattcaacacattgaaagtttaaaaagtaactttgtctacataaaacttgtaaattatttctatatttgaatccttaact 31830186  T
Q  492 agaaccctaaagacattggttaataagaccct 523  Q
    ||| |||||| | |||||||||| ||||||||    
T  31830185 agagccctaagggcattggttaacaagaccct 31830154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 374 - 490
Target Start/End: Complemental strand, 36473232 - 36473116
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||| ||||||||| |||| | | || |||||||||||||| |||||||||| |||||||||||| || ||||| | |||||| |||| |||||||    
T  36473232 aagaagttaaaaaaggaagttttgtctaggaaatgatgcattcaagacattgaaagattaaaaagtaacattttctacataaaatttataaattatttct 36473133  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||| ||||||    
T  36473132 atttttaaattcttaac 36473116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 524
Target Start/End: Original strand, 30374671 - 30374778
Alignment:
Q  417 aacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaactagaaccctaaagacattggttaata 516  Q
    |||||||| ||||||||||||||||| |||||||  | ||| ||||||| ||||||||||||| |||| |||| ||   |||||| | |||||||||| |    
T  30374671 aacacattaaaagtttaaaaagtaaccttatctatataaaacttgtaaattatttctatatttgaatctttaattaatgccctaagggcattggttaaca 30374770  T
Q  517 agaccctt 524  Q
    | ||||||    
T  30374771 acaccctt 30374778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 490
Target Start/End: Original strand, 42983873 - 42983986
Alignment:
Q  377 aagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctata 476  Q
    |||| |||| || |||||||||||||  ||| ||||||| |||||||||||| ||||||||||||||||  |||| | |||||| ||||  ||||| ||     
T  42983873 aagtctaaagagaaaattttattttgaaaataatgcatttaacacattgaaaatttaaaaagtaactttgactacataaaatttataaatcatttccatt 42983972  T
Q  477 tttaaatccttaac 490  Q
    ||| |||| |||||    
T  42983973 tttgaatcattaac 42983986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 39818921 - 39818842
Alignment:
Q  405 aatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatc 484  Q
    |||||||| ||||||||||| || |||||||||||||| || ||||| |||||||| || | ||||||||  ||||||||    
T  39818921 aatgatgctttcaacacattaaacgtttaaaaagtaacattttctacatgaaatttatagattatttctaattttaaatc 39818842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 48600645 - 48600703
Alignment:
Q  414 ttcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttc 472  Q
    ||||| ||||||||| |||||||||||| ||| ||||||| |||||| |||| ||||||    
T  48600645 ttcaatacattgaaactttaaaaagtaattttttctacgtaaaatttataaattatttc 48600703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Original strand, 26716376 - 26716421
Alignment:
Q  525 attttattaatcaaaatgtgtttaatacaatttagtatatcaacca 570  Q
    |||| |||||||||||||||||||||| ||||| |||| |||||||    
T  26716376 atttcattaatcaaaatgtgtttaatataatttggtatttcaacca 26716421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 451
Target Start/End: Original strand, 31375484 - 31375575
Alignment:
Q  359 ttggggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    |||||||||||||| | ||||| |||| | |||||||| | |||| |||  || |||||||||||||||| ||||||||| ||| || |||||    
T  31375484 ttggggcacttgttta-gaagtctaaataagaaattttttcttggaaattgtgtattcaacacattgaaactttaaaaaggaacattttctac 31375575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 31844946 - 31845050
Alignment:
Q  389 gaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatcctta 488  Q
    |||||||||| |||||| |  || |||||||| |||| || |||||||||||| |||   ||| | ||||||||||| ||||||  | ||| ||||||||    
T  31844946 gaaattttatcttgggatttgtgtattcaacatattggaactttaaaaagtaatttttcatacattaaatttgtaaattatttccttttttgaatcctta 31845045  T
Q  489 actag 493  Q
    |||||    
T  31845046 actag 31845050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 428
Target Start/End: Complemental strand, 46665721 - 46665662
Alignment:
Q  368 ttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaa 428  Q
    |||||||| |||||||||| ||||||||||| || | |||| |||||||||||| ||||||    
T  46665721 ttgttaaa-aagtttaaaagggaaattttatctttgaaatgttgcattcaacaccttgaaa 46665662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 522
Target Start/End: Original strand, 51277950 - 51278099
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgca-ttcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttc 472  Q
    ||||||||||||||||||||||||| |||| ||||||| | || ||||||||||||||||||||| ||| ||||||||| | ||| ||||||| ||||||    
T  51277950 aagaagtttaaaaaggaaattttatcttggaaatgatgtaatttaacacattgaaagtttaaaaattaaatttatctacataaaacttgtaaattatttc 51278049  T
Q  473 tatatttaaatccttaactagaaccctaaagacattggttaataagaccc 522  Q
    ||||||| |||| ||||||||  |||||| |||||| ||||| |||||||    
T  51278050 tatatttgaatctttaactagtgccctaaggacattagttaacaagaccc 51278099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 374 - 533
Target Start/End: Complemental strand, 14193961 - 14193802
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||||||||||||| |||||| | || |||||||||||||| ||||||||||||||||||||||| || ||||| | |||||| |||| ||||| |    
T  14193961 aagaagtttaaaaaggaagttttatctcggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaatttataaattattttt 14193862  T
Q  474 atatttaaatccttaactagaaccctaaagacattggttaataagacccttattttatta 533  Q
    || ||||||| |||||| |   |||| | | |||||||||  ||||||||| ||||||||    
T  14193861 atttttaaattcttaaccattgccctgagggcattggttagcaagaccctttttttatta 14193802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 374 - 509
Target Start/End: Original strand, 24970952 - 24971087
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||||||| |||||||||| | |||  ||||||| ||| | |||||||||||||||||||||||| || ||| | ||||||||||||| || ||||    
T  24970952 aagaagtttaaagaggaaattttgtcttgaaaatgatgtattaagcacattgaaagtttaaaaagtaaccttttctgcatgaaatttgtaaattacttct 24971051  T
Q  474 atatttaaatccttaactagaaccctaaagacattg 509  Q
    || ||| |||||||||||   |||||||||||||||    
T  24971052 atttttgaatccttaacttataccctaaagacattg 24971087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 362 - 451
Target Start/End: Original strand, 38868828 - 38868916
Alignment:
Q  362 gggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    ||||||||||||| ||| | |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38868828 gggcacttgttaa-gaaatctaaagaggaaattttgtcttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttttctac 38868916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 490
Target Start/End: Complemental strand, 53333662 - 53333546
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||||| ||||||| || || |||||| | ||| |||||||||| | ||| |||||||||||||||||||| ||||| |||||||| |||| ||||| |    
T  53333662 aagaagtgtaaaaagaaagttctattttagaaataatgcattcaagatattaaaagtttaaaaagtaactttttctacatgaaatttataaattattttt 53333563  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||| ||||||    
T  53333562 atttttaaattcttaac 53333546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 490
Target Start/End: Complemental strand, 26683751 - 26683635
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||||| ||||| |||| |||| | |||  ||| |||||||||| ||||||||| ||||||||||||  || ||||| | |||||| |||| ||||||     
T  26683751 aagaagtctaaaagggaagttttgtcttgaaaataatgcattcaagacattgaaaatttaaaaagtaatattttctacataaaatttataaattatttcc 26683652  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||||||||||    
T  26683651 atttttaaatccttaac 26683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 428
Target Start/End: Original strand, 36363572 - 36363623
Alignment:
Q  377 aagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaa 428  Q
    ||||||||| | |||||||| |||||||| ||||||||||||||||||||||    
T  36363572 aagtttaaagaagaaattttgttttgggattgatgcattcaacacattgaaa 36363623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 490
Target Start/End: Original strand, 21240162 - 21240239
Alignment:
Q  413 attcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaac 490  Q
    ||||||||||||||||  |||||||  |||||| ||||||||||| || | || | |||| || ||||||||||||||    
T  21240162 attcaacacattgaaatattaaaaaacaactttttctacgtgaaagttatcaattgtttccatttttaaatccttaac 21240239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 570
Target Start/End: Original strand, 47739047 - 47739092
Alignment:
Q  525 attttattaatcaaaatgtgtttaatacaatttagtatatcaacca 570  Q
    |||| ||||||||||||||||| || ||||||| ||||||||||||    
T  47739047 atttcattaatcaaaatgtgttcaacacaatttggtatatcaacca 47739092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 366 - 492
Target Start/End: Complemental strand, 21273788 - 21273662
Alignment:
Q  366 acttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaa 465  Q
    |||||||||| ||||||||| ||  |||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||||||   |||||||||||    
T  21273788 acttgttaaa-aagtttaaagagataattttatcttgggaacgatgtattcaacacatggaaagtttaaaaagtaactttatctacacaaaatttgtaaa 21273690  T
Q  466 ctatttctatat-ttaaatccttaacta 492  Q
     ||||||||| | || ||||||||||||    
T  21273689 ttatttctatttgttgaatccttaacta 21273662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 3686792 - 3686908
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||||||||| ||| |||| | |||| |||||||||||||| | |||||||||||||||| || | || || || | ||| || |||| |||||||    
T  3686792 aagaagtttaaaaatgaagttttgtcttggaaatgatgcattcaagatattgaaagtttaaaaaatagcattttcgacataaaacttataaattatttct 3686891  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||| ||||||    
T  3686892 atttttaaattcttaac 3686908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 501
Target Start/End: Original strand, 24093780 - 24093917
Alignment:
Q  362 gggcacttgttaaagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttg 461  Q
    ||||||||||||| |||| ||||||  |||| ||||| |||||||||||| ||||||||| |||||| ||||||| | |||||| ||||| | ||||||     
T  24093780 gggcacttgttaa-gaagcttaaaagagaaagtttatcttgggaatgatgtattcaacaccttgaaactttaaaatg-aactttttctacatcaaattta 24093877  T
Q  462 taaactatttctatatttaaatccttaactagaaccctaa 501  Q
    |||   |||||||| ||| | | ||||||||| |||||||    
T  24093878 taattcatttctatttttgagttcttaactagtaccctaa 24093917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 10228310 - 10228425
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    ||||| |||||||||||| |||| | |||| |||||||||||||| ||||| ||||||| |||||||| ||| |||||   |||||| |||| |||||      
T  10228310 aagaaatttaaaaaggaagttttttcttggaaatgatgcattcaagacattaaaagttt-aaaagtaattttttctacaaaaaatttataaattattttc 10228408  T
Q  474 atatttaaatccttaac 490  Q
    || ||||||| ||||||    
T  10228409 atttttaaattcttaac 10228425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 31535682 - 31535730
Alignment:
Q  393 ttttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaa 441  Q
    |||||| |||| ||||||||||| |||||||||||||||||||||||||    
T  31535682 ttttatcttggaaatgatgcatttaacacattgaaagtttaaaaagtaa 31535730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 30326671 - 30326725
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaa 428  Q
    ||||||||||||| ||||||||||| |||||| |  || ||||||||||||||||    
T  30326671 aagaagtttaaaatggaaattttatcttgggatttgtgtattcaacacattgaaa 30326725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 342948 - 343016
Alignment:
Q  377 aagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaacttt 445  Q
    |||||||||| | ||||||| |||||| | | ||| ||||||||||||||||  ||||||| |||||||    
T  342948 aagtttaaaatgaaaattttgttttggaatttatgtattcaacacattgaaacattaaaaaataacttt 343016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 405 - 490
Target Start/End: Complemental strand, 41284678 - 41284593
Alignment:
Q  405 aatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaac 490  Q
    |||||||||||||| ||| |||||||||||||||||||  | ||||| | |||||| |||| ||||||||| ||||||||||||||    
T  41284678 aatgatgcattcaagacactgaaagtttaaaaagtaacactttctacataaaatttataaattatttctatttttaaatccttaac 41284593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 489
Target Start/End: Original strand, 4640213 - 4640298
Alignment:
Q  404 gaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaaatccttaa 489  Q
    |||||||||||||||||| |||||| |||||||||| ||||| ||||||| ||| || |||| |||||  || |||||||||||||    
T  4640213 gaatgatgcattcaacacgttgaaaatttaaaaagttactttttctacgtaaaacttataaattattttcatttttaaatccttaa 4640298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 41311694 - 41311810
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttct 473  Q
    |||||||||||| || ||||||| |||||  ||| ||||||| |||| |||||||||||||||||||| ||| ||||| | |||||| ||||  ||||      
T  41311694 aagaagtttaaagagaaaattttgttttgaaaattatgcatttaacaaattgaaagtttaaaaagtaattttttctacataaaatttataaatcatttac 41311793  T
Q  474 atatttaaatccttaac 490  Q
    || ||| ||||||||||    
T  41311794 atttttgaatccttaac 41311810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 374 - 451
Target Start/End: Complemental strand, 752265 - 752188
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    ||||||| |||| | |||||||| | |||||| |||||||||||||||||||||| || ||||||||| ||| |||||    
T  752265 aagaagtctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaagtaattttttctac 752188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 490
Target Start/End: Original strand, 12880090 - 12880198
Alignment:
Q  382 taaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctacgtgaaatttgtaaactatttctatatttaa 481  Q
    |||| ||||| |||||| |||| || | || |||||||||||||||| |||||||||||| ||| ||||| | ||| || | || |||||| || ||| |    
T  12880090 taaagaggaagttttatcttggaaacggtgtattcaacacattgaaattttaaaaagtaattttttctacataaaacttatcaattatttccatttttga 12880189  T
Q  482 atccttaac 490  Q
    |||||||||    
T  12880190 atccttaac 12880198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 40867917 - 40867980
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaa 437  Q
    |||||||||||||| ||| |||| | ||   ||||||| |||||||||||||||||||||||||    
T  40867917 aagaagtttaaaaatgaagttttgtctttaaaatgatgtattcaacacattgaaagtttaaaaa 40867980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 19220 - 19158
Alignment:
Q  382 taaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactt 444  Q
    ||||||||||||||||| |||||||| ||  | ||| |||||||||| ||||| |||||||||    
T  19220 taaaaaggaaattttatcttgggaataatatagtcagcacattgaaactttaacaagtaactt 19158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 451
Target Start/End: Original strand, 5029 - 5106
Alignment:
Q  374 aagaagtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttatctac 451  Q
    ||||| |||||||||||| |||| | |||| |||||||||||||| ||||| |||  || |||||||| ||| |||||    
T  5029 aagaaatttaaaaaggaagttttttcttggaaatgatgcattcaagacatttaaaagtttaaaagtaattttttctac 5106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 48496 - 48435
Alignment:
Q  378 agtttaaaaaggaaattttattttgggaatgatgcattcaacacattgaaagtttaaaaagt 439  Q
    |||||||||| |||| ||| | |||| |||||||||||||| | ||| ||||||||||||||    
T  48496 agtttaaaaatgaaaatttgtattggaaatgatgcattcaatatattaaaagtttaaaaagt 48435  T

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