View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_high_99 (Length: 292)
Name: NF16091_high_99
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_high_99 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 38857041 - 38856775
Alignment:
| Q |
17 |
agggaataacaagtttcttgaaatgcatttttgatccatactttgtatttttctaaccgagactcttacgtagagaaatcagtgtttctatatgctatat |
116 |
Q |
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| T |
38857041 |
agggaataacaagtttcttgaaatgcatttttgatccatacttggtatttttttaaccgagacccttacataaagaaaccagtgtttctatatgctatat |
38856942 |
T |
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| Q |
117 |
----tggtgttgtatatatgtatttagtgcaaataatagttccttgcccaaaaatttagtaaaaaagcataactacttactttgttatgatcattggttt |
212 |
Q |
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| T |
38856941 |
atattggtgttgtatatatgtatttagtgcaaataatagttccttgcccaaaaatttagtaaaaaagcattactacttactttgttatgatcattggttt |
38856842 |
T |
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| Q |
213 |
gtggtaccttctgacgttcactgttaatggcacctctttttgattaaaaaataatgtaaaagacatt |
279 |
Q |
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| T |
38856841 |
gtggtaccttctgacgttcactgttaacggcacctctttttgattaaaaaataatgtaaaagccatt |
38856775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 37690308 - 37690061
Alignment:
| Q |
17 |
agggaataacaagtttcttgaaatgcatttttgatccatactttgtatttttctaaccgagactcttacgtagagaaatcagtgtttctatatgctatat |
116 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||| | |||||| ||||||||||||||||||||| |
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| T |
37690308 |
agggaataacaagtttcttgaaatgcatttt-gatccatactttgtatttttctaatcgaatttcttacatggagaaaccagtgtttctatatgctatat |
37690210 |
T |
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| Q |
117 |
tggtgttgtatatatgtatttagtgcaaataatagttccttgcccaaaaatttagtaaaaaagcataactacttactttgttatgatcattggtttgtgg |
216 |
Q |
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| T |
37690209 |
ttgtgttgcatatatgtatttagtgcaaataatagttccttacccaaaaatttagtaaaaaagcatcacttcttactttattatgatctttggtttgtgg |
37690110 |
T |
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| Q |
217 |
taccttctgacgttcactgtt---aatggcacctctttttgattaaaaa |
262 |
Q |
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||||||||| ||||||||||| || |||||| ||||||||||||||| |
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| T |
37690109 |
taccttctgtcgttcactgttaacaacggcaccactttttgattaaaaa |
37690061 |
T |
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