View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_100 (Length: 299)
Name: NF16091_low_100
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_100 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 29287180 - 29286918
Alignment:
| Q |
15 |
atgaaccttccaccctcttctctcctcaatcactacaataggcagtcccttggattccaacttcattcataaaacaaacatgtcgggatttttaatcttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29287180 |
atgaaccttccaccctcttctctcctcaatcactataataggcagtcccttggattccaacttcattcataaaacaaacatgtcgggatttttaatcttt |
29287081 |
T |
|
| Q |
115 |
gtaaactccatcttcattataacacctccacctcctccacgatctcctcatccaccctcgtgtcgttcttaaaaataattcgatttcttgcttgccaaat |
214 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29287080 |
gtaaactccatcttcatgataacacctccacctcctccacgatctcctcatccaccctcgtgtcattcttaaaaataattcgatttcttgcttgccaaat |
29286981 |
T |
|
| Q |
215 |
agcccacatggttgcgtaccaaataagccttaattaacccctttcaaattcgcttgttgttactttc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29286980 |
agcccacatggttgcgtaccaaataagcc----ttaacccctttcaaattcgcttgttgttactttc |
29286918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 10727932 - 10727978
Alignment:
| Q |
54 |
aggcagtcccttggattccaacttcattcataaaacaaacatgtcgg |
100 |
Q |
| |
|
||||| || ||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
10727932 |
aggcaatctcttgggttccaacatcattcataaaacaaacatgtcgg |
10727978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 3960858 - 3960922
Alignment:
| Q |
177 |
tcgttcttaaaaataattcgatttcttgcttgccaaatagcccacatggttgcgtaccaaataag |
241 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||| ||||| || |||| | ||||||||| |
|
|
| T |
3960858 |
tcgttcttaaaaatgatttgatttctcgcttgccaaatggcccaaatcattgcatgccaaataag |
3960922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University