View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_101 (Length: 297)
Name: NF16091_low_101
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_101 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 36926024 - 36926311
Alignment:
| Q |
10 |
gtgagatgaatattggtgttgatcaattgcttcacctcttcaaatttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaa |
109 |
Q |
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| T |
36926024 |
gtgaaatgaatattggtgttgatcaattgcttcacctcttcaaatttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaa |
36926123 |
T |
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| Q |
110 |
tcgaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactc |
209 |
Q |
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| T |
36926124 |
tcgaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactc |
36926223 |
T |
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| Q |
210 |
gatcaagaaagactcggaacttcaattttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggcca |
297 |
Q |
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| T |
36926224 |
aatcaagaaagactcggaacttcaatcttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggcca |
36926311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 297
Target Start/End: Complemental strand, 46709523 - 46709280
Alignment:
| Q |
54 |
tttcagaggaatggctgttaaggactcaacttcgccatacggtcttcgattattaatcgaggattacccttatgcagttgatggactggagatttggttt |
153 |
Q |
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| T |
46709523 |
tttcagaggaatggcaattaaagattcagcttctccgcatggccttcgactaatagtcaacgattacccttacgcggtggacgggctagagatttggttt |
46709424 |
T |
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| Q |
154 |
gccatcaagacatgggttaaagactactgctccatttactacaaggatgaggactcgatcaagaaagactcggaacttcaattttggtggaaggaaataa |
253 |
Q |
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| T |
46709423 |
gcaatcaacacatgggttcaggactactgttccttttactacaagaatgatgacacggtaaagaaagatgcagaactacaatcttggtggaaggaattga |
46709324 |
T |
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| Q |
254 |
gggaagagggtcatggtgacaagaaagatgagccttggtggcca |
297 |
Q |
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| T |
46709323 |
tacaagaaggtcacggcgacaagaaaaacgagccttggtggcca |
46709280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 49608508 - 49608466
Alignment:
| Q |
255 |
ggaagagggtcatggtgacaagaaagatgagccttggtggcca |
297 |
Q |
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| T |
49608508 |
ggaagaggatcatggtgacaagaaagatgagccttggtggcca |
49608466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 49608567 - 49608531
Alignment:
| Q |
145 |
atttggtttgccatcaagacatgggttaaagactact |
181 |
Q |
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| T |
49608567 |
atttggtttgccatcaagacatgggttgaggactact |
49608531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 44000277 - 44000211
Alignment:
| Q |
231 |
tcaattttggtggaaggaaataagggaagagggtcatggtgacaagaaagatgagccttggtggcca |
297 |
Q |
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| T |
44000277 |
tcaatcttggtggaaggaaataagagaaaatggtcacggtgacaagaaatatgagccatggtggcca |
44000211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 6262522 - 6262441
Alignment:
| Q |
112 |
gaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagactactgctccatttact |
193 |
Q |
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| T |
6262522 |
gaggattacccttatgctgttgatggacttgacatttgggatgctattaagacatgggtacaagactacgtctccatatact |
6262441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 6262378 - 6262338
Alignment:
| Q |
256 |
gaagagggtcatggtgacaagaaagatgagccttggtggcc |
296 |
Q |
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| T |
6262378 |
gaagtgggtcatggtgacaagaaagacgagccatggtggcc |
6262338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 9606044 - 9606114
Alignment:
| Q |
109 |
atcgaggattacccttatgcagttgatggactggagatttggtttgccatcaagacatgggttaaagacta |
179 |
Q |
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| T |
9606044 |
atcgaggactacccttatgcagttgatggactcgagatatgggatgctattaagtcatgggtccaagacta |
9606114 |
T |
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