View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_103 (Length: 294)
Name: NF16091_low_103
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_103 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 89 - 283
Target Start/End: Original strand, 4874797 - 4874991
Alignment:
| Q |
89 |
taatttttcttctcaatccaatcttctctccaatgtcaaattaagctcaaatacatgaaaatgggtttgcataagaatctgaaacaaatctgggttagtc |
188 |
Q |
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| T |
4874797 |
taatttttcttctcaattcaatcttctctccaatgtcaaattaagctcaaatacatgaaaatgggtttgcataagaatccgaaacaaatctgggttagtc |
4874896 |
T |
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| Q |
189 |
atagaaagttcatttatgatccaacatcttttaacatagtgaagaaaacaacaaaaatctagatttgggtcagtcaccgaaccgtttcatttcag |
283 |
Q |
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| T |
4874897 |
acataaagttcatatatgatccaacatcttttaacatagtgaagaaaacaacaaaaatctagatttgggtcagtcaccgaaccgttccatttcag |
4874991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 295106 - 294971
Alignment:
| Q |
17 |
atggttgtttagtgtcattaatggtggaatgcagaagcaaaaaacagatcaagctcaaagatagaaaatatataatttttcttctcaatccaatcttctc |
116 |
Q |
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| T |
295106 |
atggctgtttagtgtcattaatggcggaatacaggagcaaaaaacagatcaagctcaaagacagaaaatatataatttttcttctcaatgcaatcttctc |
295007 |
T |
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| Q |
117 |
tccaatgtcaaattaagctcaaatacatgaaaatgg |
152 |
Q |
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| T |
295006 |
tccaatatcaaattaagctcaaatacatgaaaatgg |
294971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 45282203 - 45282125
Alignment:
| Q |
87 |
tataatttttcttctcaatccaatcttctctccaatgtcaaattaagctcaaatacatgaaaatgggtttgcataagaa |
165 |
Q |
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||||||||||||||||||||||||||||| |||| || || ||| |||||||| |||||||||||| |||||| ||||| |
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| T |
45282203 |
tataatttttcttctcaatccaatcttctttccactgccatattgagctcaaagacatgaaaatggatttgcacaagaa |
45282125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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