View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_105 (Length: 292)
Name: NF16091_low_105
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_105 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 3789082 - 3789354
Alignment:
| Q |
2 |
taatagtcattttcttcattttcaaacacattgcctttatatcatcatcaccaactacttgatccaccttcttatttatctcttgccttgatataaatcc |
101 |
Q |
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| T |
3789082 |
taatagtcattttcttcattttcaaacacatttcctttatgtcatcatcaccaactacttgatccaccttcttctttatctcttgccttgatataaatcc |
3789181 |
T |
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| Q |
102 |
atcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789182 |
atcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggt |
3789281 |
T |
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| Q |
202 |
acaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggt |
274 |
Q |
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| T |
3789282 |
acaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggt |
3789354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 272
Target Start/End: Complemental strand, 3801025 - 3800755
Alignment:
| Q |
2 |
taatagtcattttcttcattttcaaacacattgcctttatatcatcatcaccaactacttgatccaccttcttatttatctcttgccttgatataaatcc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| |||||||||| | || |
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| T |
3801025 |
taatagtcattttcttcattttcaaacacattgcctttatgtcatcatcaccaactacttgatacaccttcttctttatctctttccttgatatataacc |
3800926 |
T |
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| Q |
102 |
atcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggt |
201 |
Q |
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| T |
3800925 |
atcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggccaacacaagaaaggt |
3800826 |
T |
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| Q |
202 |
acaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatg |
272 |
Q |
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| T |
3800825 |
acaccagcatgtacaccttctatggtagaattccatccacaatgacttataaagcaagcaatggctggatg |
3800755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 106 - 274
Target Start/End: Original strand, 3767850 - 3768018
Alignment:
| Q |
106 |
tcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacac |
205 |
Q |
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| T |
3767850 |
tcatccttgtctaattcaaatccaaccttccacacatcacaaatatatgacttgttcgtaaattgatcagttgcaaatggccaacataagaaaggtatac |
3767949 |
T |
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| Q |
206 |
cggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggt |
274 |
Q |
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| T |
3767950 |
cagaatatacaccttctatagtagaattccaaccacaatgactaatgaaacaagctatagcaggatggt |
3768018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 100 - 263
Target Start/End: Original strand, 3780122 - 3780285
Alignment:
| Q |
100 |
ccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaag |
199 |
Q |
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| T |
3780122 |
ccatcttcatccttgtctagttcaagtccaaccttccacacatcacaaacatatgacttgttcataaattgatcaccgtgaaacggccaacacaagaaag |
3780221 |
T |
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| Q |
200 |
gtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaat |
263 |
Q |
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| T |
3780222 |
gtacaccgctatatacaccttctacggtagaattccatccgcaatgactaatgaaacaagcaat |
3780285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 203
Target Start/End: Original strand, 3755159 - 3755299
Alignment:
| Q |
63 |
atccaccttcttatttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattg |
162 |
Q |
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|||||||||||| ||||||||| | ||| ||| ||||||| ||||| || || ||| | | |||| |||||| |||||||||||||| | || || |
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| T |
3755159 |
atccaccttcttctttatctctccctttgttattaatccattttcatccttttcaaatcccaatccaaccttccaaacatcacaaatatatgtcttgttc |
3755258 |
T |
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| Q |
163 |
agaaattgatcagttaaaaatggccaacacaagaaaggtac |
203 |
Q |
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| T |
3755259 |
ataagttgatcactaaaaaatggcaaacacaacaaaggtac |
3755299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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