View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_108 (Length: 285)
Name: NF16091_low_108
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_108 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 8201662 - 8201852
Alignment:
| Q |
17 |
gatgaattgaaaaggcatagaataggtgagggtggtatggaattggatgaccttagcttccagcaactgcgtagtcttgaagaggatatgaattcttcca |
116 |
Q |
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| T |
8201662 |
gatgaattgaaaaggcatagaataggtgagggtggtatggaattggatgaccttagcttccagcaactgcgtagtcttgaagaggatatgaattcttcca |
8201761 |
T |
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| Q |
117 |
ttgcaaaaatacgtgaaaggaaggtacaatacttgcaattttatggatcttcaaattctttaatttgttcaattctataattctctttatt |
207 |
Q |
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| T |
8201762 |
ttgcaaaaatacgtgaaaggaaggtacaatacttacaattttatggatcttcaaattctttaatttgttcaattctataattctctttatt |
8201852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 8201993 - 8202060
Alignment:
| Q |
202 |
tttattgtagcaaattttcaagtgactagcagatttgccgaaggcttattcttcttatgaaatgaatc |
269 |
Q |
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| T |
8201993 |
tttattgtagcaaattttcaagtgactagcagatttgcctaaggcttattcttcttatgaaatgaatc |
8202060 |
T |
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