View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_114 (Length: 275)
Name: NF16091_low_114
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_114 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 14282050 - 14281789
Alignment:
| Q |
1 |
tatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgt |
100 |
Q |
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| T |
14282050 |
tatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgt |
14281951 |
T |
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| Q |
101 |
gttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaag |
200 |
Q |
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| T |
14281950 |
ggtggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaag |
14281851 |
T |
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| Q |
201 |
gggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
262 |
Q |
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| T |
14281850 |
gggaccatgctgctattgtaggaacagttggatcgggcaagtcttcattattggcttctgtg |
14281789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 14320192 - 14319938
Alignment:
| Q |
8 |
atttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtg |
107 |
Q |
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| T |
14320192 |
atttctcaagcaacaatatctttagggaggttggatgagttcatggtgagtaaggaaatggatgagaatgcagtgcaaagagaggagaattgtgatggtg |
14320093 |
T |
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| Q |
108 |
atgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggacca |
207 |
Q |
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| T |
14320092 |
atgtagccgtggagataaaagatgggaaattttcatgggatgataaggatgagaatgaggcgttgacagtggaagagttggtaattaagaaaggggaccg |
14319993 |
T |
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| Q |
208 |
tgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
262 |
Q |
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| T |
14319992 |
tgctgctattgtaggaactgttggttcaggcaagtcttcattattggcttctgtg |
14319938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 14303808 - 14303547
Alignment:
| Q |
1 |
tatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgt |
100 |
Q |
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|||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||| |||| ||| |
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| T |
14303808 |
tatcaatatttcgcaagcaacgatatcattagggaggttggataagttcatgatgagtaaggaaatggatgagaatgcagtgcaaagagaggagaactgt |
14303709 |
T |
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| Q |
101 |
gttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaag |
200 |
Q |
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| T |
14303708 |
aatggtgatgtagctgtggagataaaagatgggaaattttcttgggatgatatggatgagaatgaggctttgcgagttaaggaattggtgattaagaaag |
14303609 |
T |
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| Q |
201 |
gggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
262 |
Q |
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| T |
14303608 |
gggaccatgctgctgttgtaggaactgttggatcaggcaagtcttcattactggcttctgtg |
14303547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 25884874 - 25884620
Alignment:
| Q |
8 |
atttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtg |
107 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||| |||| |||| ||||| ||||| |
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| T |
25884874 |
atttctcaagcaacaatatctttagggaggttggatgagttcatgacgagtaaggaaatggatgagaatgcagtgcaacgagaggagaattgtgatggtg |
25884775 |
T |
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| Q |
108 |
atgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggacca |
207 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||| || |
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| T |
25884774 |
atgtagctgtggagataaaagatgggaaattctcatgggatgataacgatgagaacgacgctctgagagttgaagagttggtaattaagaaaggggatca |
25884675 |
T |
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| Q |
208 |
tgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
262 |
Q |
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| T |
25884674 |
tgctgctgttgtaggaactgttggttcagggaagtcttcattattggcttctgtg |
25884620 |
T |
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