View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_119 (Length: 264)
Name: NF16091_low_119
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_119 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 5663378 - 5663165
Alignment:
| Q |
29 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaa |
128 |
Q |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataac---agaaagatgaa |
5663282 |
T |
|
| Q |
129 |
gaagttataacccaaggcagcagaacataactactggctcgtgagtacc-aaattgacaggaaatggaggagaacgtgaagctaa--tgtctttaactac |
225 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||| | |
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| T |
5663281 |
gaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttc |
5663182 |
T |
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| Q |
226 |
ttgtgagaagcgaccat |
242 |
Q |
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||||||||||||||||| |
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| T |
5663181 |
ttgtgagaagcgaccat |
5663165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 52131504 - 52131404
Alignment:
| Q |
140 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta-atg-tctttaactacttgtgagaagcg |
237 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| ||| ||||||||||||| |
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| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgctacatgttctttgacttcttgtgagaagcg |
52131409 |
T |
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| Q |
238 |
accat |
242 |
Q |
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||||| |
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| T |
52131408 |
accat |
52131404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 22007884 - 22007809
Alignment:
| Q |
173 |
gtaccaaattgacaggaaatggaggag----aacgtgaagcta-atg-tctttaactacttgtgagaagcgaccat |
242 |
Q |
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| T |
22007884 |
gtaccaaattgacaggaaatggaggagaatcaacgtgaagctacatgttctttaacttcttgtgaaaagcgaccat |
22007809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
140 |
ccaaggcagcagaacataactactggctcgtgag |
173 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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