View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_12 (Length: 576)
Name: NF16091_low_12
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_12 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 45383489 - 45382912
Alignment:
| Q |
1 |
taaatgccttttggtggggaaatggtggaaacaataatagaggtattcattggctatcttgggataaactcattgttcataaaaaatttggcgggatggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45383489 |
taaatgccttttggtggggaaatggtggaaacaataatagaggtattcattggctatcttgggataaactcattgttcataaaaaatttggcgggatggg |
45383390 |
T |
|
| Q |
101 |
cttcaaagatttgacggctttcaatttggcaatgctaggaaagcaagggtggaaattccaaacccaacctgaatgtttggtcacaagactgtttaaagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45383389 |
cttcaaagatttgacggctttcaatttggcaatgctaggaaagcaagggtggaaattccaaacccaacctgaatgtttggtcacaagactgtttaaagct |
45383290 |
T |
|
| Q |
201 |
aggtactttccacgtggtaattatattgaggcgaagctaggccataatccaagttttgtttggcgaggcatttttaatgcaaggatggtggtgcgctcgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45383289 |
aggtactttccacgtggtaattatattgaggcgaagctaggccataatccaagttttgtttggcgaggcatttttaatgcaaggatggtggtgcgctcag |
45383190 |
T |
|
| Q |
301 |
gggcaagatggaagataggcaacataattaatattccaatatttgaagcgccttggttgagtgatggtggctgcattttaggcgaaggccagtcaagtga |
400 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45383189 |
gggcaagatcgaagataggcaacataattaatattccaatatttgaagcgccttggttgagtgatggtggctgcattttaggcgaaggccagtcaagtga |
45383090 |
T |
|
| Q |
401 |
tgtaatacatcagacaagaattaa--ctcttattgatcacaataatcataattgggattataacatgatcaattattattttgatcctgaaacagtgcag |
498 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45383089 |
tgtaatacatcagacaagaattaactctcttattgatcacaataatcataattgggattataacgtgatcaattattattttgatcctgaaacagtgcag |
45382990 |
T |
|
| Q |
499 |
aaaattttaaaaactcctctcttttatcaggtggaggaagaccaacttatatggagagcagagaaaaatggacattat |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45382989 |
aaaattttaaaaactcctctcttttatcaggtggaggaagaccaacttatatggagagcagagaaaaatggacattat |
45382912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 898351 - 898188
Alignment:
| Q |
9 |
ttttggtggggaaatggtggaaacaataatagaggtattcattggctatcttgggataaactcattgttcataaaaaatttggcgggatgggcttcaaag |
108 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||||||| ||||| || ||||| || || | | | || || |||| ||| ||| || | || |||| |
|
|
| T |
898351 |
ttttggtgggggaatggaggaagcaataatagaggtattcactggctttcctgggagaagcttactatgcacaagaaatatggtggggtgagttttaaag |
898252 |
T |
|
| Q |
109 |
atttgacggctttcaatttggcaatgctaggaaagcaagggtggaaattccaaacccaacctga |
172 |
Q |
| |
|
|||| ||||| ||||| || |||||| | || || ||||||||||| || |||||||| ||||| |
|
|
| T |
898251 |
atttaacggccttcaacttagcaatgttgggtaaacaagggtggaagtttcaaacccatcctga |
898188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 7174638 - 7174756
Alignment:
| Q |
45 |
attcattggctatcttgggataaactcattgttcataaaaaatttggcgggatgggcttcaaagatttgacggctttcaatttggcaatgctaggaaagc |
144 |
Q |
| |
|
||||||||||||||||||||||| || | ||| || ||||| | ||| || ||||| || || |||||||| || || ||| | | |||||||| || | |
|
|
| T |
7174638 |
attcattggctatcttgggataagcttactgtgcacaaaaactatgggggcatggggtttaaggatttgacagcgtttaatctagtgatgctagggaaac |
7174737 |
T |
|
| Q |
145 |
aagggtggaaattccaaac |
163 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
7174738 |
aaggatggaaattccaaac |
7174756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 27041378 - 27041033
Alignment:
| Q |
1 |
taaatgccttttggtggggaaatggtggaaacaataatagaggtattcattggctatcttgggataaactcattgttcataaaaaatttggcgggatggg |
100 |
Q |
| |
|
||||||| |||||||||| |||| |||| ||||||||||||||||||||||| |||||||| || || | | | || || ||| ||| || ||| | |
|
|
| T |
27041378 |
taaatgctttttggtgggagcatggaggaagtaataatagaggtattcattggctttcttgggagaagcttactctgcacaagcaatatggtggaatgag |
27041279 |
T |
|
| Q |
101 |
cttcaaagatttgacggctttcaatttggcaatgctaggaaagcaagggtggaaattccaaacccaacctgaatgtttggtcacaagactgtttaaagct |
200 |
Q |
| |
|
||| |||||||| ||||||||||| || |||||| | || || ||||||||| || |||||||||||||| | | |||| |||| ||| ||||| || |
|
|
| T |
27041278 |
ctttaaagatttaacggctttcaacttagcaatgttgggtaaataagggtggatgtttcaaacccaacctgagtctctggtaacaaaactttttaaggcg |
27041179 |
T |
|
| Q |
201 |
aggtactttccacgtggtaattatattgaggcgaagctaggccataatccaagttttgtttggcgaggcatttttaatgcaaggatggtggtgcgctcgg |
300 |
Q |
| |
|
|||| ||||| ||| || ||||| | | |||||| |||| || |||||||||||||||||||| | ||||||| ||||| |||| | || || || | |
|
|
| T |
27041178 |
cggtattttcctcgtagtgattatttgaacgcgaaggtaggacacaatccaagttttgtttggcgtagtatttttagtgcaaagatgattgtccgatcag |
27041079 |
T |
|
| Q |
301 |
gggcaagatggaagataggcaacataattaatattccaatatttga |
346 |
Q |
| |
|
| || |||||||| || || |||| || ||||||||||| ||||| |
|
|
| T |
27041078 |
gtgctagatggaaaattggaaacaacataaatattccaatgtttga |
27041033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 34672158 - 34672311
Alignment:
| Q |
1 |
taaatgccttttggtggggaaatggtggaaacaataatagaggtattcattggctatcttgggataaactcattgttcataaaaaatttggcgggatggg |
100 |
Q |
| |
|
|||||| |||||||||||| ||||| || | || | ||||| ||||||||||||||||| |||| || | ||||||||||| ||| || ||||| |
|
|
| T |
34672158 |
taaatggcttttggtgggggaatggagggagtaacagaagaggaattcattggctatcttgtaataagcttagagttcataaaaatcatggaggtatggg |
34672257 |
T |
|
| Q |
101 |
cttcaaagatttgacggctttcaatttggcaatgctaggaaagcaagggtggaa |
154 |
Q |
| |
|
||||| ||||||||||| || ||| |||||||| |||| ||||| || ||||| |
|
|
| T |
34672258 |
gttcaaggatttgacggcgtttaatctggcaatgttaggtaagcagggttggaa |
34672311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 10514780 - 10514848
Alignment:
| Q |
96 |
atgggcttcaaagatttgacggctttcaatttggcaatgctaggaaagcaagggtggaaattccaaacc |
164 |
Q |
| |
|
||||| |||||||||||||| || || ||| |||||||||| ||||| |||||||||||| | |||||| |
|
|
| T |
10514780 |
atgggtttcaaagatttgacagcatttaatgtggcaatgcttggaaaacaagggtggaaactacaaacc |
10514848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 3237180 - 3237247
Alignment:
| Q |
96 |
atgggcttcaaagatttgacggctttcaatttggcaatgctaggaaagcaagggtggaaattccaaac |
163 |
Q |
| |
|
||||| ||||||||| | |||| || ||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3237180 |
atgggattcaaagatcttgcggcgtttaatgtagcaatgctcggaaagcaagggtggaaattccaaac |
3237247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 33364013 - 33364077
Alignment:
| Q |
105 |
aaagatttgacggctttcaatttggcaatgctaggaaagcaagggtggaaattccaaacccaacc |
169 |
Q |
| |
|
|||||||||| |||| ||||| |||||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
33364013 |
aaagatttgataacttttaatttagcaatgttgggaaagcaaggatggaaattacaaacccaacc |
33364077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 16331462 - 16331496
Alignment:
| Q |
129 |
gcaatgctaggaaagcaagggtggaaattccaaac |
163 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
16331462 |
gcaatgctcggaaagcaagggtggaaattccaaac |
16331496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 8529609 - 8529650
Alignment:
| Q |
117 |
gctttcaatttggcaatgctaggaaagcaagggtggaaattc |
158 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
8529609 |
gctttcaatttagctatgctcggaaagcaagggtggaaattc |
8529650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University