View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_126 (Length: 252)
Name: NF16091_low_126
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_126 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 1623601 - 1623828
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
103 |
Q |
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| T |
1623601 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacagagagatcggaggc |
1623700 |
T |
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| Q |
104 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
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| T |
1623701 |
tgatcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctgaatttaaa |
1623800 |
T |
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| Q |
201 |
agattcaagagaaatatgtaaaaattag |
228 |
Q |
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| T |
1623801 |
agattcaagagaaatatgtaaaaattag |
1623828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 1606479 - 1606702
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagac--agagatcggag-- |
109 |
Q |
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| T |
1606479 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggc |
1606578 |
T |
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| Q |
110 |
---------cgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
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| T |
1606579 |
tgatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1606678 |
T |
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| Q |
201 |
agattcaagagaaatatgtaaaaa |
224 |
Q |
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| T |
1606679 |
tgatccaagagaaatatgtaaaaa |
1606702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 1629777 - 1629987
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagac--agagatcgg---- |
107 |
Q |
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| T |
1629777 |
agatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggacgc |
1629876 |
T |
|
| Q |
108 |
-------agcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
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| T |
1629877 |
tgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
1629976 |
T |
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| Q |
201 |
agattcaagag |
211 |
Q |
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| T |
1629977 |
tgatccaagag |
1629987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 10820921 - 10820711
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
103 |
Q |
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| T |
10820921 |
agatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggagagatcagaggc |
10820822 |
T |
|
| Q |
104 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
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| T |
10820821 |
tgatcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaa |
10820722 |
T |
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| Q |
201 |
agattcaagag |
211 |
Q |
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| T |
10820721 |
tgatccaagag |
10820711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 18781295 - 18781522
Alignment:
| Q |
14 |
agatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgaaatagcacaccgatagaagacagaga---------- |
103 |
Q |
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||||||||||||||| ||| ||||||||||| ||||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
18781295 |
agatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacagagagatcggaggc |
18781394 |
T |
|
| Q |
104 |
---tcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctaaatttaaa |
200 |
Q |
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| T |
18781395 |
tgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaa |
18781494 |
T |
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| Q |
201 |
agattcaagagaaatatgtaaaaattag |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
18781495 |
agattcaagagaaatatgtaaaaattag |
18781522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 12802995 - 12803052
Alignment:
| Q |
135 |
ccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgccta |
192 |
Q |
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| T |
12802995 |
ccagccgtgttttcaaaagtaatgtcacgtgcaatgaagtgaagaccatcaattccta |
12803052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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