View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_127 (Length: 250)

Name: NF16091_low_127
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_127
NF16091_low_127
[»] chr5 (4 HSPs)
chr5 (8-242)||(14504034-14504271)
chr5 (102-236)||(35160758-35160895)
chr5 (114-242)||(7775333-7775463)
chr5 (110-203)||(19677169-19677265)
[»] chr7 (2 HSPs)
chr7 (102-231)||(22572419-22572551)
chr7 (100-235)||(32936789-32936926)
[»] chr8 (4 HSPs)
chr8 (104-234)||(15081494-15081627)
chr8 (102-241)||(9295250-9295392)
chr8 (113-236)||(10456238-10456364)
chr8 (125-250)||(18180736-18180865)
[»] scaffold0251 (1 HSPs)
scaffold0251 (107-250)||(8191-8337)
[»] chr2 (1 HSPs)
chr2 (106-236)||(5841225-5841358)
[»] chr1 (1 HSPs)
chr1 (101-242)||(42071351-42071496)
[»] chr3 (3 HSPs)
chr3 (106-151)||(33528047-33528092)
chr3 (102-235)||(25340113-25340250)
chr3 (106-150)||(20398434-20398478)
[»] chr6 (2 HSPs)
chr6 (114-241)||(8568633-8568762)
chr6 (111-248)||(11190408-11190547)
[»] chr4 (2 HSPs)
chr4 (175-250)||(38223134-38223209)
chr4 (96-151)||(34943480-34943535)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 14504271 - 14504034
Alignment:
Q  8 tcgaagaatatctccatgtttttatgaaatgcatgctaaccgacaacagtcatgcttcaatcaaccaataacctaaccagcaacgcagtcaagttgacgc 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14504271 tcgaataatatctccatgtttttatgaaatgcatgctaaccgacggcagtcatgcttcaatcaaccaataacctaaccagcaacgcagtcaagttgacgc 14504172  T
Q  108 agaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| ||    
T  14504171 agaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaacctgtcaaataagagtttccagaatccaccaaag 14504072  T
Q  205 tagagaaaggatctcgataattttattgaatgcaaaaa 242  Q
    | ||||||||||||||||||||||||||||||||||||    
T  14504071 tggagaaaggatctcgataattttattgaatgcaaaaa 14504034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 35160758 - 35160895
Alignment:
Q  102 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 198  Q
    ||||||||||| |||||||||| || ||| |  |||||||| ||||||||   ||||||||||| | ||||||   ||||||||| |||||  || ||||    
T  35160758 tgacgcagaacagaagcaaggattaacaaacactaaacctaaaagataaacagacaagttgcaaacgacaaacctgtcaaataagggtttcaggattcca 35160857  T
Q  199 ccagagtagagaaaggatctcgataattttattgaatg 236  Q
    ||||| |  ||||| | |||||||||||||||||||||    
T  35160858 ccagaattaagaaaagttctcgataattttattgaatg 35160895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 7775463 - 7775333
Alignment:
Q  114 gaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagaga 210  Q
    |||||||||| |||||| ||||||||||| ||||||||   ||||||||||||| ||||||   ||||| ||  |||| | |||||||| ||| |  |||    
T  7775463 gaagcaaggattagcaaacgttaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaaaggttttcggaatccactagaattaaga 7775364  T
Q  211 aaggatctcgataattttattgaatgcaaaaa 242  Q
    || | ||| ||||||||||||||||| |||||    
T  7775363 aaag-tctagataattttattgaatggaaaaa 7775333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 19677169 - 19677265
Alignment:
Q  110 aacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccaga 203  Q
    |||||||||||||| ||||||||| ||| |||| ||||||||   | | ||||||||| ||||||   ||||||||| |||| | ||||||||||||    
T  19677169 aacggaagcaaggattagcaagcgctaagcctaaaagataaacagataggttgcaagcgacaaacctttcaaataagggttttcggaatccaccaga 19677265  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 231
Target Start/End: Original strand, 22572419 - 22572551
Alignment:
Q  102 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaa---ctcaaataagagtttccagaatcca 198  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||||   ||| ||||||||| |||||    ||||||||| |||||| |||||||    
T  22572419 tgacgcagaacggaagcaaggattagcaagcgctaaacctaaaagataaacagacaggttgcaagcgacaaatctatcaaataagggtttccggaatcca 22572518  T
Q  199 ccagagtagagaaaggatctcgataattttatt 231  Q
    | ||| | |||||| | ||||||| ||||||||    
T  22572519 caagaattgagaaaagttctcgattattttatt 22572551  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 32936789 - 32936926
Alignment:
Q  100 gttgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaa---ctcaaataagagtttccagaatc 196  Q
    ||||||||| |||||| ||||| | ||||||| ||||||||||  || ||||  ||||||||||||||||||||    ||||||||| |||| | |||||    
T  32936789 gttgacgcataacggatgcaagaattagcaagagttaaacctaagagctaaacaaacaagttgcaagcaacaaatatgtcaaataagggttttcggaatc 32936888  T
Q  197 caccagagtagagaaaggatctcgataattttattgaat 235  Q
    ||||| | | ||||||   ||||||||||||||||||||    
T  32936889 caccataattgagaaa-attctcgataattttattgaat 32936926  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 15081627 - 15081494
Alignment:
Q  104 acgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccacc 200  Q
    |||||||||||||||||||| || ||| || ||||| ||  |||||||   ||||||||||||| ||||||   ||||||||  |||||||||||||||     
T  15081627 acgcagaacggaagcaaggattaacaaacgctaaacataagagataaacacacaagttgcaagcgacaaacctgtcaaataaaggtttccagaatccaca 15081528  T
Q  201 agagtagagaaaggatctcgataattttattgaa 234  Q
    ||| | |||||| | |||||||||||||||||||    
T  15081527 agaattgagaaaagttctcgataattttattgaa 15081494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 241
Target Start/End: Complemental strand, 9295392 - 9295250
Alignment:
Q  102 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 198  Q
    |||||||||||| ||||||||| |  |||||| |||| |||  |||||||   ||||||||||||| |||||    ||||||| |||||||  |||||||    
T  9295392 tgacgcagaacgaaagcaaggattgacaagcgctaaatctaagagataaacagacaagttgcaagcgacaaatctgtcaaatatgagtttctggaatcca 9295293  T
Q  199 ccagagtagagaaaggatctcgataattttattgaatgcaaaa 241  Q
    ||||| | |||||| | ||||||||||||||||||||| ||||    
T  9295292 ccagaattgagaaaagttctcgataattttattgaatgtaaaa 9295250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 10456238 - 10456364
Alignment:
Q  113 ggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagag 209  Q
    ||||||||||| ||||||||  |||| ||| ||||||||   | ||||||||||| ||||||   ||||| ||| ||||||| |||||||||  || |||    
T  10456238 ggaagcaaggattagcaagctctaaatctaaaagataaatagataagttgcaagcgacaaacctgtcaaaaaagggtttccaaaatccaccaatgttgag 10456337  T
Q  210 aaaggatctcgataattttattgaatg 236  Q
    ||| | || |||||| |||||||||||    
T  10456338 aaaagttcccgataactttattgaatg 10456364  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 18180736 - 18180865
Alignment:
Q  125 tagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaa-taagagtttccagaatccaccagagtagagaaaggatctcg 220  Q
    ||||||||| |||||||| | ||||||   ||| ||||||||| ||||||   ||||| |||| ||||||||||||||||||| | |||| |  ||||||    
T  18180736 tagcaagcgctaaacctaaaggataaactgacatgttgcaagcgacaaacctatcaaaataagggtttccagaatccaccagaattgagagaaaatctcg 18180835  T
Q  221 -ataattttattgaatgcaaaaagtgtctct 250  Q
     ||||||||||||||| ||||||||| ||||    
T  18180836 aataattttattgaat-caaaaagtgcctct 18180865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 250
Target Start/End: Original strand, 8191 - 8337
Alignment:
Q  107 cagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccaga 203  Q
    |||||| |||||||||| || |||||  |||||||||||||||||   ||||||||||||| ||||||   ||||||||| |||||  ||||||| ||||    
T  8191 cagaacagaagcaaggattatcaagctctaaacctagaagataaacagacaagttgcaagcgacaaacctgtcaaataagggtttctggaatccatcaga 8290  T
Q  204 gtagag-aaaggatctcgataattttattgaatgcaaaaagtgtctct 250  Q
     | ||| ||| |||||||| ||||| |||||||| |||||||||||||    
T  8291 attgagaaaaagatctcgaaaatttgattgaatg-aaaaagtgtctct 8337  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 5841358 - 5841225
Alignment:
Q  106 gcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccag 202  Q
    ||||||| ||||||| || |||||| || |||||||| ||||||||   ||||||||||||| ||||||   ||||| | | |||| | |||||||| ||    
T  5841358 gcagaacagaagcaaagattagcaaacgctaaacctaaaagataaacatacaagttgcaagcgacaaacctgtcaaacaggggttttcggaatccacaag 5841259  T
Q  203 agtagagaaaggatctcgataattttattgaatg 236  Q
    | | |||||| | |||||||||||||||||||||    
T  5841258 aattgagaaaagttctcgataattttattgaatg 5841225  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 242
Target Start/End: Original strand, 42071351 - 42071496
Alignment:
Q  101 ttgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcc 197  Q
    ||||||||||||||||||||||  || |||||| |||||||| ||||||||   ||| ||| ||||  ||||||   ||||||||| |||||  ||||||    
T  42071351 ttgacgcagaacggaagcaagggttaacaagcgctaaacctaaaagataaacagacatgttacaagtgacaaacctatcaaataagcgtttctggaatcc 42071450  T
Q  198 accagagtagagaaaggatctcg-ataattttattgaatgcaaaaa 242  Q
    | || | | |||| || |||||| ||||||||||||||| ||||||    
T  42071451 atcataattgagagagaatctcgaataattttattgaattcaaaaa 42071496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 33528047 - 33528092
Alignment:
Q  106 gcagaacggaagcaaggaatagcaagcgttaaacctagaagataaa 151  Q
    |||||||||||||||||| ||||||||||||||| || ||||||||    
T  33528047 gcagaacggaagcaaggattagcaagcgttaaacttaaaagataaa 33528092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 25340113 - 25340250
Alignment:
Q  102 tgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatcca 198  Q
    ||||||| || ||||||||||| || ||| ||||||||||| ||||||||   ||| |||||| |||||||||   ||||||||| |||||  |||||||    
T  25340113 tgacgcataaaggaagcaaggattaacaaacgttaaacctaaaagataaacagacaggttgcacgcaacaaacctatcaaataagggtttctggaatcca 25340212  T
Q  199 ccagagtagagaaaggatctcgat-aattttattgaat 235  Q
     || | | |||||| | | ||||| |||||||||||||    
T  25340213 tcataattgagaaaagttgtcgataaattttattgaat 25340250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 20398434 - 20398478
Alignment:
Q  106 gcagaacggaagcaaggaatagcaagcgttaaacctagaagataa 150  Q
    |||||||||||||||| | ||||||||| |||||||| |||||||    
T  20398434 gcagaacggaagcaagaattagcaagcgctaaacctaaaagataa 20398478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 241
Target Start/End: Original strand, 8568633 - 8568762
Alignment:
Q  114 gaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtagaga 210  Q
    |||||||||| |||||| || |||||||| ||||||||   ||||||||||||| ||||||   ||||| || ||||| | |||||||| ||| |  |||    
T  8568633 gaagcaaggattagcaaacgctaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaaaagttttcggaatccactagaattaaga 8568732  T
Q  211 aaggatctcgataattttattgaatgcaaaa 241  Q
    || | ||| ||||||||||||||||| ||||    
T  8568733 aaag-tctagataattttattgaatggaaaa 8568762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 11190547 - 11190408
Alignment:
Q  111 acggaagcaaggaatagcaagcgttaaacctagaagataaaacaacaagttgcaagcaacaaac---tcaaataagagtttccagaatccaccagagtag 207  Q
    ||||||||||||  |||||| |  |||||||| || |||||   ||| ||||||||| ||||||   ||||||||| |||||| |||||||||||| | |    
T  11190547 acggaagcaagggttagcaaacactaaacctaaaatataaagagacaggttgcaagcgacaaacctatcaaataag-gtttccggaatccaccagaattg 11190449  T
Q  208 agaaaggatctcg-ataattttattgaatgcaaaaagtgtct 248  Q
    ||| |  |||||| ||||||||||||||| ||||||||||||    
T  11190448 agagaaaatctcgaataattttattgaat-caaaaagtgtct 11190408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 38223134 - 38223209
Alignment:
Q  175 tcaaataagagtttccagaatccaccagagtagagaaaggatctcgataatttt-attgaatgcaaaaagtgtctct 250  Q
    ||||||||| |||| |||||||||| ||| | |||||| | ||||||||||||| |||||||| |||||||||||||    
T  38223134 tcaaataagggtttacagaatccactagaattgagaaaag-tctcgataatttttattgaatgaaaaaagtgtctct 38223209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 34943480 - 34943535
Alignment:
Q  96 tcaagttgacgcagaacggaagcaaggaatagcaagcgttaaacctagaagataaa 151  Q
    |||| |||||||||||| ||||  |||| |||||||||||||||||| ||||||||    
T  34943480 tcaatttgacgcagaacagaagtcaggattagcaagcgttaaacctaaaagataaa 34943535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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