View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_128 (Length: 249)

Name: NF16091_low_128
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_128
NF16091_low_128
[»] chr8 (4 HSPs)
chr8 (18-238)||(5672199-5672421)
chr8 (130-196)||(33822242-33822308)
chr8 (130-196)||(40439782-40439848)
chr8 (142-193)||(5374591-5374642)
[»] chr2 (3 HSPs)
chr2 (132-231)||(28694376-28694475)
chr2 (130-188)||(14384575-14384633)
chr2 (141-194)||(42064065-42064119)
[»] chr4 (3 HSPs)
chr4 (131-196)||(31063592-31063657)
chr4 (138-195)||(32324577-32324634)
chr4 (130-193)||(22508097-22508160)
[»] chr7 (2 HSPs)
chr7 (141-192)||(43542414-43542465)
chr7 (149-190)||(22597396-22597437)
[»] chr5 (2 HSPs)
chr5 (141-196)||(15711058-15711113)
chr5 (142-194)||(9227841-9227893)
[»] chr3 (3 HSPs)
chr3 (145-196)||(52551116-52551167)
chr3 (130-196)||(1214803-1214868)
chr3 (131-196)||(118738-118803)
[»] chr6 (1 HSPs)
chr6 (141-196)||(32109600-32109655)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 5672421 - 5672199
Alignment:
Q  18 attctaacaaaatttgtttgtctctaattacattttaatgcttacttttcttattcaaaaaattaatgcttacttttctattatgtcccttacttccttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5672421 attctaacaaaatttgtttgtctctaattacattttaatgcttacctttcttattcaaaaaattaatgcttacttttctattatgtcccttacttccttc 5672322  T
Q  118 nnnnnnnnnnng--tattatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccataccacaaacaaataacttttttg 215  Q
                  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5672321 aaaaaaaaaaaaaatattatgtcccttactatttattgctttatcttttttcagttattttaatttatgttttccataccacaaacaaataacttttttg 5672222  T
Q  216 taaaataattcgcaattgttcat 238  Q
    |||||||||||||||||||||||    
T  5672221 taaaataattcgcaattgttcat 5672199  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 33822242 - 33822308
Alignment:
Q  130 tattatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    ||||||| ||||||||||||||| ||||||| |||| || || ||||||||| ||||||||||||||    
T  33822242 tattatgacccttactatttattactttatcattttccaattcttttaatttttgttttccatacca 33822308  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 40439848 - 40439782
Alignment:
Q  130 tattatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    ||||||| ||||||||| ||||| ||||||| |||| || || ||||||||||||||||||||||||    
T  40439848 tattatgccccttactacttattactttatctttttccaattcttttaatttatgttttccatacca 40439782  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 5374591 - 5374642
Alignment:
Q  142 tactatttattgctttatcctttttcagttattttaatttatgttttccata 193  Q
    ||||||||||| ||||||| ||||||| |||||||| |||||||||||||||    
T  5374591 tactatttattactttatcttttttcaattattttattttatgttttccata 5374642  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 231
Target Start/End: Complemental strand, 28694475 - 28694376
Alignment:
Q  132 ttatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccataccacaaacaaataacttttttgtaaaataattcgcaat 231  Q
    ||||| ||||||||||||||| ||||||  ||||||| ||||||||||||||||||| |||||||  || ||| ||  ||||||||||| ||||| ||||    
T  28694475 ttatgacccttactatttattactttatattttttcaattattttaatttatgtttttcataccattaataaagaatatttttgtaaaacaattcacaat 28694376  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 14384633 - 14384575
Alignment:
Q  130 tattatgtcccttactatttattgctttatcctttttcagttattttaatttatgtttt 188  Q
    |||||||| | |||||||||||| ||||||| ||||||| || ||||||||||| ||||    
T  14384633 tattatgttctttactatttattactttatcttttttcaattcttttaatttatttttt 14384575  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 42064065 - 42064119
Alignment:
Q  141 ttactatttattgcttt-atcctttttcagttattttaatttatgttttccatac 194  Q
    |||||||||||| |||| ||||||||| | || ||||||||||||||||||||||    
T  42064065 ttactatttattacttttatccttttttaattcttttaatttatgttttccatac 42064119  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 31063592 - 31063657
Alignment:
Q  131 attatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    |||||| || |||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||    
T  31063592 attatgccctttactatttattgctttatttttttccagttcttttaatttatgttttccatacca 31063657  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 32324577 - 32324634
Alignment:
Q  138 cccttactatttattgctttatcctttttcagttattttaatttatgttttccatacc 195  Q
    ||||||||||||||| ||||||| |||||||  ||||| |||||||||||||||||||    
T  32324577 cccttactatttattactttatcttttttcaagtatttaaatttatgttttccatacc 32324634  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 22508097 - 22508160
Alignment:
Q  130 tattatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccata 193  Q
    ||||||| ||||||||||||||| ||| ||| |||| || || ||||| |||||||||||||||    
T  22508097 tattatgccccttactatttattacttgatctttttccaattcttttattttatgttttccata 22508160  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 43542414 - 43542465
Alignment:
Q  141 ttactatttattgctttatcctttttcagttattttaatttatgttttccat 192  Q
    |||||||||||| ||||||||||||||| || |||||||||| |||||||||    
T  43542414 ttactatttattactttatcctttttcaattcttttaatttacgttttccat 43542465  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 22597396 - 22597437
Alignment:
Q  149 tattgctttatcctttttcagttattttaatttatgttttcc 190  Q
    |||| ||||||| ||||||| |||||||||||||||||||||    
T  22597396 tattactttatcttttttcaattattttaatttatgttttcc 22597437  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 15711113 - 15711058
Alignment:
Q  141 ttactatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    |||||||||||| ||||||| |||| || || ||||||||||||||||||||||||    
T  15711113 ttactatttattactttatctttttccaattcttttaatttatgttttccatacca 15711058  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 9227893 - 9227841
Alignment:
Q  142 tactatttattgctttatcctttttcagttattttaatttatgttttccatac 194  Q
    |||||||||||  |||||| ||||||| || |||||||||||||||| |||||    
T  9227893 tactatttattattttatcttttttcaattcttttaatttatgtttttcatac 9227841  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 52551167 - 52551116
Alignment:
Q  145 tatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    |||||||| ||||||| || |||||||||||||||||||||||| |||||||    
T  52551167 tatttattactttatctttgttcagttattttaatttatgtttttcatacca 52551116  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 1214868 - 1214803
Alignment:
Q  130 tattatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    ||||||| ||||||||||||||| |||||| |||||||   |  |||||||||||||||||||||||    
T  1214868 tattatgccccttactatttattactttat-ctttttcgaattctttaatttatgttttccatacca 1214803  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 118738 - 118803
Alignment:
Q  131 attatgtcccttactatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    ||||||||| ||| |||||||| ||||||| ||||  | || ||||||||||||||| ||||||||    
T  118738 attatgtcctttattatttattactttatctttttcaaattcttttaatttatgtttaccatacca 118803  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 32109655 - 32109600
Alignment:
Q  141 ttactatttattgctttatcctttttcagttattttaatttatgttttccatacca 196  Q
    |||||||||||| |||| || |||| || || ||||||||||||||||||||||||    
T  32109655 ttactatttattactttgtctttttccaattcttttaatttatgttttccatacca 32109600  T

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