View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_129 (Length: 249)
Name: NF16091_low_129
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_129 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 916439 - 916202
Alignment:
| Q |
12 |
tattctgtcgttcttcttcattcaaatattctcatccttataaaaacttcaaccttagataagataccaacggcttttttcattcgatatggaaatcgaa |
111 |
Q |
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| T |
916439 |
tattctgtcgttcttcttcattcaaatattctcatccttataaaaacttcaaccttagataagataccaacggcttttttcattcgatatggaaatcgaa |
916340 |
T |
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| Q |
112 |
tcagcgaagtgtgagtgttgtggcttgaaagaggattgcactcaagactacatcagtgaagtgaagtcaaaatttgatggaaaatggttatgtgggttgt |
211 |
Q |
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| T |
916339 |
tcagcgaagtgtgagtgttgcggcttgaaagaggattgcactcaagactacatcagtgaagtgaagtcaaaatttgatggaaaatggttatgtgggttgt |
916240 |
T |
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| Q |
212 |
gttcagaagctgttagagatgaagctattagagggaaa |
249 |
Q |
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| T |
916239 |
gttcagaagctgttagagatgaagctattagagggaaa |
916202 |
T |
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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 46870155 - 46870290
Alignment:
| Q |
100 |
atggaaatcgaatcagcgaagtgtgagtgttgtggcttgaaagaggattgcactcaagactacatcagtgaagtgaagtcaaaatttgatggaaaatggt |
199 |
Q |
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| T |
46870155 |
atggatattgaatcagcaaagtgtgaatgctgtggtttgaaagaagattgcactcaagactacataaccgatgtgaaatccaaatttgatggaaaatggt |
46870254 |
T |
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| Q |
200 |
tatgtgggttgtgttcagaagctgttagagatgaag |
235 |
Q |
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| T |
46870255 |
tatgtgggttgtgttcagaagcagtgagagatgaag |
46870290 |
T |
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