View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_13 (Length: 572)
Name: NF16091_low_13
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 305
Target Start/End: Original strand, 40696088 - 40696363
Alignment:
| Q |
30 |
tagcatcaataagataaatttttcacatgaagtatataataagtaactaaccacataaaagtagattctgtggaggaggtttctctttggcagggttagg |
129 |
Q |
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| T |
40696088 |
tagcatcaataagataaatttttcacatgaagtatataataagtaactaaccacataaaagtagattctgtggaggaggtttctctttggcagggttagg |
40696187 |
T |
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| Q |
130 |
attaggatcaaaaactctcacataaagctcttcacctaaataccaacttttcaaattctgtgatctcaagttccacattcctggattgtcaggatacaca |
229 |
Q |
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| T |
40696188 |
attaggatcaaaaactctcacataaagctcttcacctaaataccaacttttcaaattctgtgatctcaagttccacattcctggattgtcaggatacaca |
40696287 |
T |
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| Q |
230 |
taaactgcactccatcctccagggaacacttgcacagttgagcgaacgacggggtcaaataggttataacttgacc |
305 |
Q |
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| T |
40696288 |
taaactgcactccatcctccagggaacacttgcacagttgagcgaacgacggggtcaaataggttataacttgacc |
40696363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 300 - 557
Target Start/End: Complemental strand, 40696345 - 40696088
Alignment:
| Q |
300 |
ttgaccccgtcgttcgctcaactgtgcaagtgttccctggaggatggagtgcagtttatgtgtatcctgacaatccaggaatgtggaacttgagatcaca |
399 |
Q |
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| T |
40696345 |
ttgaccccgtcgttcgctcaactgtgcaagtgttccctggaggatggagtgcagtttatgtgtatcctgacaatccaggaatgtggaacttgagatcaca |
40696246 |
T |
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| Q |
400 |
gaatttgaaaagttggtatttaggtgaagagctttatgtgagagtttttgatcctaatcctaaccctgccaaagagaaacctcctccacagaatctactt |
499 |
Q |
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| T |
40696245 |
gaatttgaaaagttggtatttaggtgaagagctttatgtgagagtttttgatcctaatcctaaccctgccaaagagaaacctcctccacagaatctactt |
40696146 |
T |
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| Q |
500 |
ttatgtggttagttacttattatatacttcatgtgaaaaatttatcttattgatgcta |
557 |
Q |
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| T |
40696145 |
ttatgtggttagttacttattatatacttcatgtgaaaaatttatcttattgatgcta |
40696088 |
T |
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