View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_14 (Length: 562)

Name: NF16091_low_14
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_14
NF16091_low_14
[»] chr2 (33 HSPs)
chr2 (79-546)||(31456483-31456954)
chr2 (15-68)||(31456402-31456455)
chr2 (221-282)||(12668414-12668475)
chr2 (226-283)||(35447883-35447940)
chr2 (231-294)||(21091718-21091781)
chr2 (230-281)||(23406876-23406927)
chr2 (231-294)||(42832277-42832340)
chr2 (227-294)||(44860315-44860382)
chr2 (227-281)||(13273015-13273069)
chr2 (226-331)||(24975321-24975431)
chr2 (232-294)||(31808072-31808134)
chr2 (224-283)||(6290163-6290221)
chr2 (224-279)||(13204035-13204090)
chr2 (223-294)||(19614178-19614249)
chr2 (244-294)||(1327973-1328023)
chr2 (229-283)||(2423875-2423929)
chr2 (226-288)||(18420430-18420492)
chr2 (225-271)||(32749820-32749866)
chr2 (243-281)||(34331395-34331433)
chr2 (230-291)||(2438719-2438780)
chr2 (218-283)||(4882684-4882749)
chr2 (228-289)||(20539672-20539733)
chr2 (236-289)||(21374705-21374758)
chr2 (244-289)||(21782832-21782877)
chr2 (225-282)||(33153431-33153488)
chr2 (230-283)||(34691805-34691858)
chr2 (230-283)||(34714217-34714270)
chr2 (236-289)||(39323264-39323317)
chr2 (227-271)||(15909629-15909673)
chr2 (230-289)||(18589198-18589255)
chr2 (226-282)||(18622613-18622669)
chr2 (223-263)||(35056894-35056934)
chr2 (230-282)||(38442314-38442366)
[»] chr7 (37 HSPs)
chr7 (223-331)||(8160374-8160482)
chr7 (226-291)||(18013070-18013135)
chr7 (224-291)||(7758320-7758387)
chr7 (224-331)||(9778452-9778565)
chr7 (223-332)||(25239697-25239805)
chr7 (223-289)||(32308120-32308186)
chr7 (224-289)||(5548676-5548741)
chr7 (224-289)||(13770691-13770756)
chr7 (231-307)||(24146798-24146874)
chr7 (226-289)||(5235986-5236049)
chr7 (231-289)||(22484025-22484083)
chr7 (223-289)||(24339642-24339708)
chr7 (218-331)||(26033449-26033556)
chr7 (225-286)||(7328686-7328747)
chr7 (224-332)||(11890913-11891022)
chr7 (230-283)||(21880158-21880211)
chr7 (229-289)||(19992001-19992061)
chr7 (226-282)||(21140978-21141034)
chr7 (237-281)||(27732246-27732290)
chr7 (237-288)||(12278836-12278887)
chr7 (224-307)||(16341478-16341561)
chr7 (218-289)||(19206050-19206121)
chr7 (230-289)||(28155570-28155629)
chr7 (230-284)||(3721098-3721152)
chr7 (243-289)||(10377507-10377553)
chr7 (220-281)||(11072306-11072365)
chr7 (288-329)||(1885519-1885560)
chr7 (229-282)||(3991331-3991384)
chr7 (299-332)||(5409919-5409952)
chr7 (232-281)||(23849460-23849509)
chr7 (237-281)||(8239057-8239101)
chr7 (223-263)||(11272579-11272619)
chr7 (223-291)||(11665433-11665501)
chr7 (296-332)||(17851374-17851410)
chr7 (230-294)||(19213798-19213862)
chr7 (230-294)||(20549786-20549850)
chr7 (245-289)||(30813812-30813856)
[»] chr8 (24 HSPs)
chr8 (226-331)||(21465370-21465475)
chr8 (232-313)||(40332167-40332248)
chr8 (238-322)||(14731679-14731763)
chr8 (238-294)||(11803254-11803310)
chr8 (225-289)||(14634136-14634200)
chr8 (227-294)||(25566836-25566903)
chr8 (230-284)||(3025556-3025610)
chr8 (230-329)||(4786338-4786445)
chr8 (231-289)||(12606830-12606888)
chr8 (223-289)||(22651976-22652042)
chr8 (223-289)||(24362195-24362261)
chr8 (230-289)||(13844596-13844655)
chr8 (220-294)||(4611529-4611603)
chr8 (223-289)||(29510297-29510363)
chr8 (243-289)||(29776036-29776082)
chr8 (285-331)||(43737882-43737928)
chr8 (237-290)||(12570515-12570568)
chr8 (226-291)||(25172694-25172759)
chr8 (283-331)||(16642033-16642081)
chr8 (237-289)||(25192354-25192406)
chr8 (223-282)||(27067293-27067350)
chr8 (237-289)||(27213547-27213599)
chr8 (237-289)||(31236584-31236636)
chr8 (237-289)||(34897085-34897137)
[»] scaffold0008 (1 HSPs)
scaffold0008 (218-288)||(263360-263430)
[»] chr3 (33 HSPs)
chr3 (223-288)||(8039828-8039893)
chr3 (218-282)||(9800047-9800111)
chr3 (230-289)||(8383257-8383316)
chr3 (225-294)||(11313795-11313864)
chr3 (285-333)||(14747509-14747557)
chr3 (223-282)||(14209120-14209179)
chr3 (226-281)||(16789020-16789075)
chr3 (226-288)||(30994878-30994940)
chr3 (230-294)||(7614415-7614479)
chr3 (218-282)||(17005607-17005671)
chr3 (223-331)||(18446713-18446815)
chr3 (223-294)||(1509534-1509605)
chr3 (220-283)||(14832105-14832168)
chr3 (284-331)||(25093446-25093493)
chr3 (224-283)||(25948881-25948940)
chr3 (218-285)||(28678307-28678374)
chr3 (244-294)||(11251973-11252023)
chr3 (237-332)||(15864788-15864885)
chr3 (228-290)||(21256984-21257046)
chr3 (237-291)||(34307787-34307841)
chr3 (230-288)||(45451554-45451612)
chr3 (286-331)||(3164095-3164140)
chr3 (238-330)||(17568691-17568784)
chr3 (230-283)||(49505154-49505207)
chr3 (224-289)||(49651780-49651845)
chr3 (291-331)||(7171446-7171486)
chr3 (230-294)||(7928445-7928509)
chr3 (243-295)||(9624635-9624687)
chr3 (238-281)||(15505798-15505842)
chr3 (218-294)||(16192738-16192814)
chr3 (283-331)||(24205108-24205156)
chr3 (237-281)||(25892468-25892512)
chr3 (230-294)||(51206353-51206417)
[»] chr6 (35 HSPs)
chr6 (223-289)||(7723243-7723309)
chr6 (224-289)||(12696324-12696389)
chr6 (226-289)||(9025490-9025553)
chr6 (238-291)||(32511674-32511727)
chr6 (230-289)||(7996378-7996437)
chr6 (230-289)||(8022364-8022423)
chr6 (218-289)||(8931590-8931661)
chr6 (185-289)||(16766697-16766797)
chr6 (223-289)||(26562689-26562755)
chr6 (243-288)||(8389485-8389530)
chr6 (238-279)||(17411876-17411917)
chr6 (224-281)||(34895028-34895085)
chr6 (185-282)||(9522898-9522991)
chr6 (230-294)||(28715290-28715354)
chr6 (243-332)||(33817900-33817995)
chr6 (227-275)||(34197125-34197173)
chr6 (227-278)||(7973665-7973716)
chr6 (230-289)||(7977830-7977889)
chr6 (238-281)||(14721249-14721292)
chr6 (230-289)||(19040352-19040411)
chr6 (230-289)||(21924935-21924994)
chr6 (227-282)||(31384927-31384982)
chr6 (227-289)||(3398619-3398680)
chr6 (230-288)||(7265593-7265651)
chr6 (231-289)||(7938116-7938174)
chr6 (223-289)||(9107363-9107429)
chr6 (243-289)||(9658879-9658925)
chr6 (225-283)||(20576628-20576686)
chr6 (226-287)||(7086797-7086858)
chr6 (285-330)||(7377930-7377975)
chr6 (232-289)||(13364707-13364764)
chr6 (291-331)||(1681702-1681742)
chr6 (224-268)||(16111751-16111795)
chr6 (291-331)||(32299219-32299259)
chr6 (223-283)||(34073340-34073400)
[»] scaffold0049 (2 HSPs)
scaffold0049 (223-279)||(56932-56988)
scaffold0049 (231-288)||(63774-63831)
[»] chr5 (27 HSPs)
chr5 (218-290)||(25817494-25817566)
chr5 (223-291)||(39698539-39698607)
chr5 (227-331)||(6471886-6471996)
chr5 (230-291)||(32630735-32630796)
chr5 (223-291)||(22423805-22423873)
chr5 (185-289)||(18592073-18592173)
chr5 (178-281)||(12641682-12641781)
chr5 (222-288)||(25888285-25888353)
chr5 (227-288)||(36838544-36838605)
chr5 (225-289)||(15410443-15410507)
chr5 (237-281)||(25863212-25863256)
chr5 (226-294)||(41091253-41091321)
chr5 (226-289)||(3966503-3966566)
chr5 (223-282)||(21542037-21542096)
chr5 (226-289)||(39205880-39205943)
chr5 (238-289)||(43001800-43001851)
chr5 (256-294)||(2236811-2236848)
chr5 (223-289)||(6035483-6035548)
chr5 (223-289)||(7677705-7677771)
chr5 (230-289)||(15382477-15382538)
chr5 (223-289)||(21522750-21522816)
chr5 (223-289)||(21533316-21533382)
chr5 (231-281)||(23287350-23287400)
chr5 (230-294)||(6770538-6770600)
chr5 (237-281)||(7997173-7997217)
chr5 (231-283)||(12927660-12927712)
chr5 (245-289)||(27932235-27932279)
[»] chr1 (35 HSPs)
chr1 (237-330)||(3490397-3490498)
chr1 (225-289)||(5376495-5376559)
chr1 (223-283)||(8010280-8010340)
chr1 (223-283)||(21038089-21038149)
chr1 (224-291)||(1486703-1486770)
chr1 (224-287)||(34712377-34712440)
chr1 (226-282)||(7918207-7918263)
chr1 (225-289)||(9629895-9629959)
chr1 (223-279)||(25361896-25361952)
chr1 (223-294)||(17754306-17754377)
chr1 (265-316)||(29229434-29229485)
chr1 (223-294)||(38503315-38503386)
chr1 (285-331)||(17831594-17831640)
chr1 (223-281)||(47989505-47989563)
chr1 (232-281)||(22907341-22907390)
chr1 (230-291)||(39130767-39130828)
chr1 (225-281)||(6612166-6612222)
chr1 (238-282)||(35999330-35999374)
chr1 (230-294)||(40181866-40181930)
chr1 (223-279)||(44482240-44482296)
chr1 (238-289)||(13436458-13436509)
chr1 (230-281)||(21530697-21530748)
chr1 (223-283)||(31694703-31694765)
chr1 (227-286)||(37055853-37055912)
chr1 (230-289)||(41877470-41877529)
chr1 (230-281)||(52903257-52903308)
chr1 (230-288)||(5927340-5927398)
chr1 (285-331)||(22881679-22881725)
chr1 (243-281)||(28674808-28674846)
chr1 (231-289)||(36878461-36878519)
chr1 (237-294)||(52284697-52284755)
chr1 (225-283)||(5944287-5944347)
chr1 (224-261)||(35919270-35919307)
chr1 (225-289)||(113299-113363)
chr1 (227-290)||(48148034-48148098)
[»] scaffold0122 (1 HSPs)
scaffold0122 (226-289)||(8666-8729)
[»] chr4 (26 HSPs)
chr4 (170-331)||(19312289-19312450)
chr4 (238-331)||(37203222-37203315)
chr4 (226-286)||(30838213-30838273)
chr4 (230-313)||(54580023-54580107)
chr4 (226-289)||(56257933-56257994)
chr4 (223-294)||(51701253-51701324)
chr4 (237-331)||(3144659-3144753)
chr4 (225-287)||(35952612-35952674)
chr4 (237-290)||(1213228-1213280)
chr4 (224-289)||(3947760-3947825)
chr4 (218-283)||(30982866-30982931)
chr4 (231-283)||(847957-848009)
chr4 (223-331)||(9825505-9825607)
chr4 (225-289)||(13134450-13134514)
chr4 (237-289)||(26504306-26504358)
chr4 (230-294)||(35161031-35161095)
chr4 (232-307)||(7727961-7728036)
chr4 (230-289)||(8423718-8423777)
chr4 (230-289)||(23292986-23293045)
chr4 (243-282)||(37698719-37698758)
chr4 (230-289)||(38847012-38847071)
chr4 (243-282)||(49652985-49653024)
chr4 (244-281)||(20179364-20179401)
chr4 (230-294)||(2361975-2362039)
chr4 (283-331)||(10499336-10499383)
chr4 (224-288)||(15659754-15659818)
[»] scaffold0223 (1 HSPs)
scaffold0223 (223-289)||(20172-20238)
[»] scaffold0123 (1 HSPs)
scaffold0123 (160-291)||(44459-44586)
[»] scaffold0024 (2 HSPs)
scaffold0024 (223-281)||(68235-68293)
scaffold0024 (223-331)||(126679-126781)
[»] scaffold0020 (1 HSPs)
scaffold0020 (226-294)||(135308-135376)
[»] scaffold1528 (1 HSPs)
scaffold1528 (223-294)||(1030-1101)
[»] scaffold0136 (1 HSPs)
scaffold0136 (185-281)||(3808-3900)
[»] scaffold0004 (1 HSPs)
scaffold0004 (234-289)||(92807-92862)
[»] scaffold0044 (1 HSPs)
scaffold0044 (223-280)||(53189-53246)
[»] scaffold1300 (1 HSPs)
scaffold1300 (294-330)||(540-576)
[»] scaffold0697 (1 HSPs)
scaffold0697 (230-281)||(1652-1703)
[»] scaffold0376 (1 HSPs)
scaffold0376 (223-294)||(6307-6378)
[»] scaffold0171 (2 HSPs)
scaffold0171 (223-261)||(23539-23577)
scaffold0171 (224-261)||(23448-23485)
[»] scaffold0168 (1 HSPs)
scaffold0168 (218-291)||(21041-21114)
[»] scaffold0188 (1 HSPs)
scaffold0188 (283-331)||(9484-9532)
[»] scaffold0026 (1 HSPs)
scaffold0026 (223-283)||(56376-56436)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 79 - 546
Target Start/End: Original strand, 31456483 - 31456954
Alignment:
Q  79 atattaaggtcaactttattgtacacaaatatgatatataagtcttgtatcatttacaaattagttttatcatagatctat-aagcacagatacttctcc 177  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| || | || |||    
T  31456483 atattaaggtcaactttattgtacacaaatgtgatatataagtcttgtatcatttataaattagtttcatcatagatctatgaagcacggacatttttcc 31456582  T
Q  178 aattaaacgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacac------gacactgacacttataattatactgaattatataattttct 271  Q
     ||||  | |||||||||||||||||||||| |||| | || || ||||||||      || ||||| ||||||||||| ||||||||| ||||||||||    
T  31456583 gattaggcatgtctcgatgtcgaacacgtgtcgtattcgaccgacaccgacacctacacgaaactgatacttataattacactgaattacataattttct 31456682  T
Q  272 taaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatagtcatcgatcattaaaccttataattaaatcaaataagata 371  Q
    |||||||||||| |||||||||| |||||| ||||||||||| ||||||||   | |||||||| ||||| |||| || ||||||||||||| |||||||    
T  31456683 taaattattagcggtgtcagtgtcgtgtccagtgtctgtatccgtatccgt---ttatagtcatagatcaataaatctaataattaaatcaa-taagata 31456778  T
Q  372 tgatgtgagttattgattta-acaaagtatgatatcaatacaaagacaaagatgagacctaatcaagttgatatatgttctatgcagtgaaattgctaca 470  Q
    ||||| || ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31456779 tgatgagacttattgatttttagaaagtatgatatcaatacaaagacaaagatgagacctaatcaagttgatatatgttctatgcagtgaaattgctaca 31456878  T
Q  471 aacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgttcctgcaacagtggtgataaaggtttt 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31456879 aacaatatcagacaaggtaaataacttgaattggaaggttacaaaccgttcctgcaacagtggtgataaaggtttt 31456954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 31456402 - 31456455
Alignment:
Q  15 atcaaaggaaaaatattaaagcacttgcttttgtgactatgtatagatcaatgc 68  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31456402 atcaagggaaaaatattaaagaacttgcttttgtgactatgtatagatcaatgc 31456455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 12668414 - 12668475
Alignment:
Q  221 ataccgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||||||| |||||||||||||| |||||||||| | ||||| | ||||||||||    
T  12668414 ataccgacacgacaccgacacttataattacactgaattatgtcattttttcaaattattag 12668475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 35447883 - 35447940
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||  ||||||||| |||||||||||||| |||||||||| ||||||||||    
T  35447883 gacacgacacaaacacttatagttatactgaattatgtaattttctttaattattagc 35447940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 21091781 - 21091718
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||||||||||| |||||| |||||| ||| | ||||||||||||||||||| ||||| ||||    
T  21091781 gacactgacacttgtaattacactgaagtatgttattttcttaaattattagcggtgtcggtgt 21091718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 23406927 - 23406876
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||||||||| ||| ||||| ||||||||| |||||||||||||||||||    
T  23406927 cgacactgacacctatgattattctgaattatgtaattttcttaaattatta 23406876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 42832277 - 42832340
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||| |||||||||||||| |||||| ||| ||||||||| ||||||||||| ||||| ||||    
T  42832277 gacaccgacacttataattacactgaaatatgtaattttctcaaattattagcggtgtcggtgt 42832340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 44860382 - 44860315
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||||||| ||||| |||||||| ||||||||||   ||||||| ||||||||||| ||||||||||    
T  44860382 acacgacaccgacacatataattacactgaattatgcgattttctcaaattattagcggtgtcagtgt 44860315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 13273015 - 13273069
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||||||||||| ||||||||| | |||||||||||||||||| |||| ||||    
T  13273015 acacgacactgacatttataattagattgaattatataattttctcaaatgatta 13273069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 24975321 - 24975431
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagc-----agtgtcagtgttgtgtccggtgtctgtatctgtatcc 320  Q
    |||||||||| ||| | |||| ||| |||||||||||  ||||||| |||||||||||      |||||||||| |||||||||||| ||  |||||||     
T  24975321 gacacgacaccgacgcatatatttacactgaattatacgattttctcaaattattagcggtgtcgtgtcagtgtcgtgtccggtgtccgtgcctgtatct 24975420  T
Q  321 gtgcttcatag 331  Q
    |||||||||||    
T  24975421 gtgcttcatag 24975431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 31808134 - 31808072
Alignment:
Q  232 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||| |||||||| |||||||||| | ||||| ||||||||||||| ||||| ||||    
T  31808134 acactgacacatataattacactgaattatgtgattttgttaaattattagcggtgtcggtgt 31808072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 6290221 - 6290163
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||| ||| || |||||||||||| || ||||||||||| |||||||||||||    
T  6290221 ccgacacgacattga-acatataattatactaaaatatataatttttttaaattattagc 6290163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 13204090 - 13204035
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattat 279  Q
    |||||||||||||||||| |||| ||||| | |||||| ||||||||| |||||||    
T  13204090 ccgacacgacactgacacatatagttatattaaattatgtaattttctcaaattat 13204035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 19614249 - 19614178
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||| |||||||| |||||||| ||||||||  |  |||||   ||||||||||||||||||||||    
T  19614249 accgacacgatactgacacatataattacactgaatttaaagatttttccaaattattagcagtgtcagtgt 19614178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 1328023 - 1327973
Alignment:
Q  244 ataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||||||||| ||| ||||||| ||||||||||| ||||| ||||    
T  1328023 ataattatactgaattttatgattttctcaaattattagcggtgtcggtgt 1327973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 2423929 - 2423875
Alignment:
Q  229 acgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||| | |||||||||||| |||||||| ||||||| ||||| |||||    
T  2423929 acgacactgactcatataattatactaaattatatgattttctcaaatttttagc 2423875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 18420430 - 18420492
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    ||||| |||| |||||||||||||  | |||||||| | ||||||| ||||||||||||||||    
T  18420430 gacacaacaccgacacttataattgcattgaattatgtgattttctcaaattattagcagtgt 18420492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 32749820 - 32749866
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttct 271  Q
    ||||||||||||||||||||| |||| |||||||||| | |||||||    
T  32749820 cgacacgacactgacacttattattacactgaattatgtgattttct 32749866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 34331433 - 34331395
Alignment:
Q  243 tataattatactgaattatataattttcttaaattatta 281  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  34331433 tataattatatttaattatataattttcttaaattatta 34331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 2438719 - 2438780
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  2438719 cgacaccgacacttgtaattacactgaattatgtgattttttgaaattattagctgtgtcag 2438780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 4882684 - 4882749
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||| ||||||||||||  ||||||| |||||| |||||||||||| ||||| | |||| ||||||    
T  4882684 ctgacaccgacacgacatcgacacttgtaattacactgaattatatcattttttcaaataattagc 4882749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 20539672 - 20539733
Alignment:
Q  228 cacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||| ||||||| |||||| ||| |||||||| ||||| | ||||||||||| |||||    
T  20539672 cacgacaccgacacttgtaattacactaaattatatgattttttcaaattattagctgtgtc 20539733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 21374705 - 21374758
Alignment:
Q  236 tgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  21374705 tgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 21374758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 21782832 - 21782877
Alignment:
Q  244 ataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||| |||||||||| | ||||||| |||||||||||||||||    
T  21782832 ataattacactgaattatgtgattttctcaaattattagcagtgtc 21782877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 33153488 - 33153431
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||| ||||||| |||||| |||||||||| | ||||| |||||| |||||    
T  33153488 cgacacgacacggacacttgtaattacactgaattatgtgatttttttaaatcattag 33153431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 34691805 - 34691858
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||||| ||||| |||||||| |||||||||||| ||||| | |||||||||||    
T  34691805 cgacaccgacacatataattacactgaattatatgattttatcaaattattagc 34691858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 34714217 - 34714270
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||||| ||||| |||||||| |||||||||||| ||||| | |||||||||||    
T  34714217 cgacaccgacacatataattacactgaattatatgattttatcaaattattagc 34714270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 39323317 - 39323264
Alignment:
Q  236 tgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  39323317 tgacacttgtaattacactgaattatgtaattttgtcaaattattagcggtgtc 39323264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 15909629 - 15909673
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttct 271  Q
    ||||||||||| ||| |||||||| |||||||||| |||||||||    
T  15909629 acacgacactgtcacatataattacactgaattatgtaattttct 15909673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 18589255 - 18589198
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||| |||| ||| |||||||| | |||||||||  ||||||||||||||||    
T  18589255 cgacactgacacatatagttagactgaattgtgtaattttct--aattattagcagtgtc 18589198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 18622669 - 18622613
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||  |||| |||||||| |||||||||| | ||||| ||||||||||||    
T  18622669 gacacgacaccaacacgtataattacactgaattatgtgattttattaaattattag 18622613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 35056934 - 35056894
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatat 263  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  35056934 accgacacgacaccgacacatataattacactgaattatat 35056894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 38442366 - 38442314
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    |||||| |||||||||||||||| |||||||| | ||||| |||||| |||||    
T  38442366 cgacaccgacacttataattatattgaattatgtgatttttttaaatcattag 38442314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 8160482 - 8160374
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgt 322  Q
    |||||||||| ||  |||| |||||||| ||| |||||| ||||||||||||||||||||| |||||||||| |||| ||||||| || || ||||||||    
T  8160482 accgacacgataccaacacatataattacactaaattatgtaattttcttaaattattagcggtgtcagtgtcgtgttcggtgtccgtgtcagtatccgt 8160383  T
Q  323 gcttcatag 331  Q
    || ||||||    
T  8160382 gcatcatag 8160374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 18013070 - 18013135
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||| ||||||||    
T  18013070 gacacgacactgacacatataattacactgaattatgtaatttttttaaattattagtagtgtcag 18013135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 7758387 - 7758320
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||| ||||||||||  |||||||    
T  7758387 ccgacacgacaccgacacacataattatactgaattatataattttctaaaattattagtggtgtcag 7758320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 331
Target Start/End: Complemental strand, 9778565 - 9778452
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattag------cagtgtcagtgttgtgtccggtgtctgtatctgta 317  Q
    |||||||||||| ||||||| ||||||||||||||||| | ||||| | ||||||| ||      ||||||| |||| |||||||||||| || || |||    
T  9778565 ccgacacgacaccgacacttgtaattatactgaattatgtgattttttcaaattatcagctgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgta 9778466  T
Q  318 tccgtgcttcatag 331  Q
    ||||||||||||||    
T  9778465 tccgtgcttcatag 9778452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 25239697 - 25239805
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgt 322  Q
    |||||||| ||| |||||| |||||||| ||||| ||||| |||||||| ||||||||| | |||||  |||||||||  || |||| |||||| |||||    
T  25239697 accgacacaaca-tgacacctataattacactgagttataaaattttctcaaattattatccgtgtcgatgttgtgtctagtttctggatctgtgtccgt 25239795  T
Q  323 gcttcatagt 332  Q
    ||||||||||    
T  25239796 gcttcatagt 25239805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 32308186 - 32308120
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||||||||| || ||||| |||||||||| | ||||||| ||||||||||| |||||    
T  32308186 accgacacgacactgacacatacaattacactgaattatgtgattttctcaaattattagcggtgtc 32308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 5548741 - 5548676
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||||||||| |||||||| |||||||||| | ||||||| ||||||| ||| |||||    
T  5548741 ccgacacgacactgacacatataattacactgaattatttgattttctcaaattatcagcggtgtc 5548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 13770756 - 13770691
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||  ||||||| |||||| |||||||||| ||||||| ||||||||||||| |||||    
T  13770756 ccgacacgacaacgacacttgtaattacactgaattatgtaatttttttaaattattagctgtgtc 13770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 307
Target Start/End: Complemental strand, 24146874 - 24146798
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 307  Q
    ||||| ||||| |||||||||| |||||||| | ||||||| |||||||||||| |||| ||||  |||||||||||    
T  24146874 gacaccgacacatataattatattgaattatgtgattttctaaaattattagcattgtcggtgtgatgtccggtgtc 24146798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 5236049 - 5235986
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||| || |  |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  5236049 gacacgacaccgatatatataattacactaaattatataattttcttaaattattagcggtgtc 5235986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 22484083 - 22484025
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| ||||| |||||||||||||||||||  |||||||| ||||||||||| |||||    
T  22484083 gacaccgacacatataattatactgaattatgcaattttctaaaattattagcggtgtc 22484025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 24339708 - 24339642
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  24339708 accgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 24339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 331
Target Start/End: Original strand, 26033449 - 26033556
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgta 317  Q
    |||| |||||||||| || ||||||| |||||| |||||||||| | ||||| | ||||||||||| | ||||||||      | ||||||||||| |||    
T  26033449 ctgacaccgacacgagaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgcgtcagtgt------ccgtgtctgtatccgta 26033542  T
Q  318 tccgtgcttcatag 331  Q
    |||||| |||||||    
T  26033543 tccgtgattcatag 26033556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 7328686 - 7328747
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagt 286  Q
    ||||||||||| ||||| |||||||| ||| |||||| | ||||||| ||||||||||||||    
T  7328686 cgacacgacaccgacacatataattacactaaattatgttattttctcaaattattagcagt 7328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 11890913 - 11891022
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt-tgtgtccggtgtctgtatctgtatccgt 322  Q
    ||||||||||||  ||||| ||||||| |||||||||||| ||||| | ||||||||| | || |||||||  ||||| ||||||  | || ||||||||    
T  11890913 ccgacacgacacctacactcataattacactgaattatatgattttttcaaattattaaccgtatcagtgtccgtgtctggtgtccatgtccgtatccgt 11891012  T
Q  323 gcttcatagt 332  Q
     |||||||||    
T  11891013 acttcatagt 11891022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 21880211 - 21880158
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||||| ||||||| |||||| |||||||||| ||||||||| |||||||||||    
T  21880211 cgacaccgacacttgtaattacactgaattatgtaattttctcaaattattagc 21880158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 19992061 - 19992001
Alignment:
Q  229 acgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||| |||||||||||||| |||||| ||| | ||||||| ||||||||||| |||||    
T  19992061 acgacaccgacacttataattacactgaaatatgtgattttctcaaattattagctgtgtc 19992001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 21140978 - 21141034
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    |||||||| | ||||| |||||| | |||||||||||| ||||||||||||||||||    
T  21140978 gacacgactccgacacctataatcacactgaattatatgattttcttaaattattag 21141034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 27732246 - 27732290
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||    
T  27732246 gacacatataattacactgaattatgtaattttcttaaattatta 27732290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 12278887 - 12278836
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||| ||||||    
T  12278887 gacacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 16341561 - 16341478
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 307  Q
    |||||||||||| | ||| |||||||| ||| |||||| | ||||||| ||||||||| ||||||| |||| |||  |||||||    
T  16341561 ccgacacgacaccggcacatataattacacttaattatgtgattttctcaaattattatcagtgtccgtgtcgtgaacggtgtc 16341478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 19206121 - 19206050
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||| ||| ||| ||||| ||||| |||||||||| |||||||| | ||||||| ||||||||||| |||||    
T  19206121 ctgacaccaacaagacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtc 19206050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 28155629 - 28155570
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||||| |||||| || ||||||| ||||||||| ||||||||||| |||||    
T  28155629 cgacaccgacacttgtaattacaccgaattatgtaattttctcaaattattagcggtgtc 28155570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 3721152 - 3721098
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagca 284  Q
    |||||| ||||| |||||||||||| |||||| | ||||||| ||||||||||||    
T  3721152 cgacaccgacacatataattatactaaattatgtgattttctcaaattattagca 3721098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 10377553 - 10377507
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||| |||||||||||| ||||||||| ||||||| |||||||    
T  10377553 tataattacactgaattatatgattttcttatattattaacagtgtc 10377507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 11072365 - 11072306
Alignment:
Q  220 gataccgacacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||||||||||||| |||||  ||||||||| ||||||||||| |||| | |||||||||    
T  11072365 gataccgacacgacaccgacac--ataattatattgaattatatatttttttcaaattatta 11072306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 1885560 - 1885519
Alignment:
Q  288 tcagtgttgtgtccggtgtctgtatctgtatccgtgcttcat 329  Q
    ||||||| |||||||||||| || ||||||||||||||||||    
T  1885560 tcagtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat 1885519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 3991384 - 3991331
Alignment:
Q  229 acgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||| ||||||| ||||||||||||||||| | ||||| | ||||||||||    
T  3991384 acgacaccgacacttgtaattatactgaattatgtgattttttcaaattattag 3991331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 5409919 - 5409952
Alignment:
Q  299 tccggtgtctgtatctgtatccgtgcttcatagt 332  Q
    |||||||||||| |||||||||||||||||||||    
T  5409919 tccggtgtctgtgtctgtatccgtgcttcatagt 5409952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 23849460 - 23849509
Alignment:
Q  232 acactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||| ||||| ||||||||||||||||||| |  ||||||||||||||||    
T  23849460 acaccgacacatataattatactgaattatgtgtttttcttaaattatta 23849509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 8239057 - 8239101
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||| |||||||| |||||||||||  |||||||||||||||||    
T  8239057 gacacatataattacactgaattataagattttcttaaattatta 8239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 263
Target Start/End: Original strand, 11272579 - 11272619
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatat 263  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  11272579 accgacacgacaccgacacttgtaattacactgaattatat 11272619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 11665433 - 11665501
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    ||||||| ||||  |||||||||||||| |||||||||| | ||||| | ||||||||||  |||||||    
T  11665433 accgacatgacatcgacacttataattagactgaattatgtgattttttcaaattattagttgtgtcag 11665501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 17851410 - 17851374
Alignment:
Q  296 gtgtccggtgtctgtatctgtatccgtgcttcatagt 332  Q
    |||||||||||| || |||||||||||||||||||||    
T  17851410 gtgtccggtgtccgtgtctgtatccgtgcttcatagt 17851374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 19213862 - 19213798
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| ||||||| || ||| |||| ||||| | ||||| | ||||||||||||||||||||||    
T  19213862 cgacaccgacacttgtatttacactgcattatgtgattttttaaaattattagcagtgtcagtgt 19213798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 20549850 - 20549786
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| ||||| |||||||| |||||||||  | ||||||| ||||||||||| ||||| ||||    
T  20549850 cgacaccgacacatataattacactgaattacgtgattttctcaaattattagcggtgtcggtgt 20549786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 30813856 - 30813812
Alignment:
Q  245 taattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| |||||||||| ||||||||| |||||||||||| ||||    
T  30813856 taattacactgaattatgtaattttctcaaattattagcaatgtc 30813812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 21465475 - 21465370
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgct 325  Q
    ||||||||||  |||||| |||||| |  ||||||||| ||||| | ||||||||||| ||||| |||| |||||||||||| |||||||||||||| ||    
T  21465475 gacacgacaccaacacttgtaattacatcgaattatatgattttttcaaattattagctgtgtccgtgtcgtgtccggtgtccgtatctgtatccgtcct 21465376  T
Q  326 tcatag 331  Q
    ||||||    
T  21465375 tcatag 21465370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 40332248 - 40332167
Alignment:
Q  232 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatc 313  Q
    |||| ||||||| |||||| |||||||||| | ||||||| |||||||| |||||||| |||| |||||||||||| |||||    
T  40332248 acaccgacacttgtaattacactgaattatgtgattttctcaaattatttgcagtgtccgtgtcgtgtccggtgtccgtatc 40332167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 14731763 - 14731679
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgt 322  Q
    |||| |||||||| ||| |||||| | ||||||| ||||||||||||||||| ||||  ||||| ||||| ||||||||||||||    
T  14731763 acacatataattacactaaattatgtgattttctcaaattattagcagtgtctgtgtcatgtccagtgtccgtatctgtatccgt 14731679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 11803310 - 11803254
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||| |||||||| |||||||||| | ||||||||||||||||| ||||||||||||    
T  11803310 acacatataattacactgaattatgtgattttcttaaattattaacagtgtcagtgt 11803254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 14634136 - 14634200
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||  |||  |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  14634136 cgacacgacaccaacaaatataattacactgaattatataattttcttaaattgttagcggtgtc 14634200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 25566903 - 25566836
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  25566903 acacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcagtgt 25566836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 3025610 - 3025556
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagca 284  Q
    |||||||||||| |||||||| |||||||||| | ||||||| ||||||||||||    
T  3025610 cgacactgacacctataattacactgaattatgtgattttctcaaattattagca 3025556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 329
Target Start/End: Original strand, 4786338 - 4786445
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattatta--------gcagtgtcagtgttgtgtccggtgtctgtatctgtatccg 321  Q
    |||||| ||||| |||||||| |||||||||| | |||||||||||||||||        |  |||||||||| |||| ||||||| || ||||||||||    
T  4786338 cgacaccgacacatataattacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtcgtgttcggtgtcagtgtctgtatccg 4786437  T
Q  322 tgcttcat 329  Q
    ||||||||    
T  4786438 tgcttcat 4786445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 12606830 - 12606888
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| ||||| |||||||| | |||||||||| ||||||| |||||||||||||||||    
T  12606830 gacaccgacacatataattacattgaattatatgattttctcaaattattagcagtgtc 12606888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 22652042 - 22651976
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| ||||||| |||||||| |||||||| | ||||| | ||||||||||| |||||    
T  22652042 accgacacgacaccgacacttgtaattatattgaattatgtgattttttcaaattattagctgtgtc 22651976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 24362195 - 24362261
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||| |||||| |||||||| |||||||||| | ||| ||| ||||||||||| |||||    
T  24362195 accgacacgacattgacacatataattacactgaattatgtgattctctcaaattattagcggtgtc 24362261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 13844596 - 13844655
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||| |||||||| ||| |||||| | ||||||| |||||||||||||||||    
T  13844596 cgacaccgacacatataattacactcaattatgtgattttctcaaattattagcagtgtc 13844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 4611603 - 4611529
Alignment:
Q  220 gataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||||  ||| || || |||||||| |||||||||| | ||||||| ||||||||||| ||||| ||||    
T  4611603 gataccgacacagcaccgagacatataattacactgaattatgttattttctcaaattattagcggtgtcggtgt 4611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 29510297 - 29510363
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||| |||| ||||||| ||||||||||||||| | | ||||| | ||||||||||| |||||    
T  29510297 accgacactacaccgacacttgtaattatactgaattttgtgattttttcaaattattagctgtgtc 29510363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 29776082 - 29776036
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||||||||  | ||||||| |||||||||||||||||    
T  29776082 tataattatactgaattacgtgattttctcaaattattagcagtgtc 29776036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 43737882 - 43737928
Alignment:
Q  285 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    ||||| |||| |||||||||||| || ||||||||||||||||||||    
T  43737882 gtgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 43737928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 12570515 - 12570568
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtca 290  Q
    ||||| |||||||| ||| |||||| |  |||||||||||||||||||||||||    
T  12570515 gacacatataattacacttaattatgtgtttttcttaaattattagcagtgtca 12570568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 25172694 - 25172759
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||||||| ||||| |||||||| | | || ||| ||||||| | |||||||||||||||||||    
T  25172694 gacacgacaccgacacatataattacattaaaatatgtaattttatcaaattattagcagtgtcag 25172759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 16642033 - 16642081
Alignment:
Q  283 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    ||||||| |||| |||||||| ||| ||||| |||||||||||||||||    
T  16642033 cagtgtctgtgtcgtgtccggcgtccgtatccgtatccgtgcttcatag 16642081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 25192354 - 25192406
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||||||||||||||| | | ||| | ||||||||||| |||||    
T  25192354 gacacttataattatactgaattatgtcactttttcaaattattagctgtgtc 25192406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 27067293 - 27067350
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||||||||||||| ||||  ||| ||||||| ||||||||| |||| |||||    
T  27067293 accgacacgacactgacacttgtaat--tacagaattatgtaattttctcaaatcattag 27067350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 27213599 - 27213547
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| |||||||| | |||||||| | ||||||| |||||||||||||||||    
T  27213599 gacacatataattacagtgaattatgtgattttctgaaattattagcagtgtc 27213547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 31236584 - 31236636
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| |||||||| | |||||||| | ||||||| |||||||||||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattattagcagtgtc 31236636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 34897137 - 34897085
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| |||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  34897137 gacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 34897085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 263360 - 263430
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    |||| |||||||||||||||||||||||||||| |||||||||| |  |||||| ||||||||||||||||    
T  263360 ctgacaccgacacgacactgacacttataattacactgaattatgtggttttctcaaattattagcagtgt 263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 8039828 - 8039893
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||    
T  8039828 accgacacgacaccgacacatataattacactgaattatataattttctcaaattattagcggtgt 8039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 9800111 - 9800047
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    |||||||||||||||||| |||||||| ||||| || ||||||| ||||||||| ||||||||||    
T  9800111 ctgataccgacacgacaccgacacttacaattacacggaattatgtaattttctcaaattattag 9800047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 8383316 - 8383257
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| |||||||||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  8383316 cgacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtc 8383257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 11313795 - 11313864
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||||| |||| |||||||| ||| |||||| | ||||||| ||||||||||||||||| ||||    
T  11313795 cgacacgacactaacacatataattacactaaattatgtgattttctcaaattattagcagtgtcggtgt 11313864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 14747557 - 14747509
Alignment:
Q  285 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatagtc 333  Q
    |||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  14747557 gtgtcagtgtcgtgtccggtgtccgtatccgtatccgtgcttcatagtc 14747509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 14209179 - 14209120
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||    
T  14209179 accgacacgacactgacacttgtaattacactgaattatgtgattttttaaaattattag 14209120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 281
Target Start/End: Complemental strand, 16789075 - 16789020
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||||||||  ||||||||||||| |||||||||||| ||||| |||||||||||    
T  16789075 gacacgacaccaacacttataattacactgaattatatgatttttttaaattatta 16789020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 30994878 - 30994940
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    ||||| ||||||| || |||||||| |||||||| | | ||||||||||||||||||||||||    
T  30994878 gacacaacactgatacgtataattacactgaattgtgtgattttcttaaattattagcagtgt 30994940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 7614415 - 7614479
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| ||||  ||||||||||||||||||| | ||||||||||||||||| | ||||| ||||    
T  7614415 cgacaccgacatatataattatactgaattatgtgattttcttaaattattaactgtgtcggtgt 7614479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 17005607 - 17005671
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    |||| ||| |||| |||| |||||||||||||| |||||||||||| ||||| | ||||||||||    
T  17005607 ctgacaccaacacaacaccgacacttataattacactgaattatatgattttatcaaattattag 17005671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 18446713 - 18446815
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgt 322  Q
    ||||||||||||||||||  |||||||| ||  |||||||| ||||| |||||||| |||| ||||     || ||||||||||| ||||| ||||||||    
T  18446713 accgacacgacactgacatatataattacacataattatatgattttgttaaattagtagc-gtgt-----ttttgtccggtgtcggtatccgtatccgt 18446806  T
Q  323 gcttcatag 331  Q
    |||| ||||    
T  18446807 gcttaatag 18446815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 1509605 - 1509534
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||| ||||||| ||||||| |||||| ||| |||||| | ||||| | ||||||||||| ||||||||||    
T  1509605 accgaaacgacaccgacacttgtaattacactaaattatgtgattttttcaaattattagctgtgtcagtgt 1509534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 14832168 - 14832105
Alignment:
Q  220 gataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||||||||||||||||||||||| |||||| | ||| |||| | ||||| | |||||||||||    
T  14832168 gataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaattattagc 14832105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 25093493 - 25093446
Alignment:
Q  284 agtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    ||||||||||| ||||||||||||||| | ||||||||| ||||||||    
T  25093493 agtgtcagtgtcgtgtccggtgtctgtgtttgtatccgtacttcatag 25093446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 25948881 - 25948940
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||||  ||||||||||||| |||||||||| | ||||| | |||||||||||    
T  25948881 ccgacacgacaccaacacttataattacactgaattatgtgattttttcaaattattagc 25948940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 28678374 - 28678307
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcag 285  Q
    |||| ||| ||||||||| ||||| || ||||||||| |||||| | ||||| |||||||||||||||    
T  28678374 ctgacaccaacacgacaccgacacatacaattatactaaattatgtgattttattaaattattagcag 28678307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 11252023 - 11251973
Alignment:
Q  244 ataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||||| |||||||||| | ||||||| |||||||||||| |||||||||    
T  11252023 ataattacactgaattatgtgattttctcaaattattagcaatgtcagtgt 11251973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 332
Target Start/End: Complemental strand, 15864885 - 15864788
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtcag--tgttgtgtccggtgtctgtatctgtatccgtgcttcatagt 332  Q
    ||||| ||| |||| ||| |||||||| ||||| | ||||||||| | ||||| |  ||| |||||||||||| || ||||| |||||||||||||||    
T  15864885 gacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatagt 15864788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 21256984 - 21257046
Alignment:
Q  228 cacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtca 290  Q
    ||||| || ||||||| ||||||||||||||||| | ||||| | ||||||||||| ||||||    
T  21256984 cacgataccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtca 21257046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 34307787 - 34307841
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||||||||||| |||||| ||| | ||||||| ||||||||||| |||||||    
T  34307787 gacacttataattacactgaaatatgtgattttctcaaattattagcggtgtcag 34307841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 45451612 - 45451554
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    |||||| ||||| ||| ||||||||||| ||| | ||||||| ||||||||||||||||    
T  45451612 cgacaccgacacatattattatactgaagtatgtgattttctcaaattattagcagtgt 45451554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 3164095 - 3164140
Alignment:
Q  286 tgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||| |||| |||||||||||| || ||||||||||||||||||||    
T  3164095 tgtccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcatag 3164140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 17568691 - 17568784
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt-tgtgtccggtgtctgtatctgtatccgtgcttcata 330  Q
    |||||| |||||| | | |||||| ||||||||| |||||||||   |||||| ||  ||||||||||||| || || ||||||||||||||||    
T  17568691 acacttgtaattacattaaattatgtaattttctcaaattattaatggtgtcattggctgtgtccggtgtccgtgtccgtatccgtgcttcata 17568784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 49505154 - 49505207
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||||||||||| |||||||| ||| |||||| | ||||||| |||||||||||    
T  49505154 cgacactgacacatataattacactaaattatgtgattttctcaaattattagc 49505207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 49651780 - 49651845
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||| ||||||| |||||| | |||||||| | ||||| | ||||||||||| |||||    
T  49651780 ccgacacgacaccgacacttgtaattacagtgaattatgtgattttttcaaattattagccgtgtc 49651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 7171486 - 7171446
Alignment:
Q  291 gtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||| ||||||||||||||| || |||||||||||||||||    
T  7171486 gtgtcgtgtccggtgtctgtgtccgtatccgtgcttcatag 7171446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 7928509 - 7928445
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| ||||| |||||||| |||||||||| | ||||| | ||||||||||| ||||| ||||    
T  7928509 cgacaccgacacatataattacactgaattatgtgattttttcaaattattagcggtgtcggtgt 7928445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 9624687 - 9624635
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattagcagtgtcagtgtt 295  Q
    |||||||| | |||||||| | ||||||| |||||||||||||||||| ||||    
T  9624687 tataattacattgaattatgtgattttctcaaattattagcagtgtcactgtt 9624635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 15505798 - 15505842
Alignment:
Q  238 acacttataattatactgaattatataa-ttttcttaaattatta 281  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||    
T  15505798 acacttataattacactgaattatataattttttttaaattatta 15505842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 16192738 - 16192814
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||| ||||||||||||   |||| |||||||| |||||||||| | ||||||| ||||||||| | ||||| ||||    
T  16192738 ctgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcggtgt 16192814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 24205108 - 24205156
Alignment:
Q  283 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    ||||||| |||| |||||||||||| || ||||| ||||||||||||||    
T  24205108 cagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcatag 24205156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 25892512 - 25892468
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||| ||| |||| |||||||||||| |||||||||||||||||    
T  25892512 gacacctatgattacactgaattatatcattttcttaaattatta 25892468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 51206353 - 51206417
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| ||||||| || ||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  51206353 cgacaccgacacttgtatttacactgaattatgtgattttttcaaattattagctgtgtcagtgt 51206417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 7723243 - 7723309
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| || || ||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  7723243 accgacacgacaccgatacatataattatgctgaattatatgattttctcaaattattagcagtgtc 7723309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 12696389 - 12696324
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  12696389 ccgacacgacactgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 12696324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 9025490 - 9025553
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||| ||||| |||||||| |||||||||| | ||||||| |||||||||||||||||    
T  9025490 gacacgacaccgacacatataattacactgaattatgtgattttctcaaattattagcagtgtc 9025553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 32511674 - 32511727
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    ||||||||||||| |||||||||| | ||||||||||||||||||| |||||||    
T  32511674 acacttataattacactgaattatgtgattttcttaaattattagcggtgtcag 32511727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 7996378 - 7996437
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||| | |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  7996378 cgacaccgacgcatataattacactgaattatatgattttctcaaattattagcagtgtc 7996437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 8022423 - 8022364
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||| | |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  8022423 cgacaccgacgcatataattacactgaattatatgattttctcaaattattagcagtgtc 8022364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 8931590 - 8931661
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||| ||||||||||||  ||||| ||||||||||||||||||| | ||||||| ||||| ||||| |||||    
T  8931590 ctgacaccgacacgacatcgacacatataattatactgaattatgttattttctcaaatttttagctgtgtc 8931661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 16766797 - 16766697
Alignment:
Q  185 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagca 284  Q
    |||||| || ||||| ||||||||||| ||| ||    ||||||||||||| ||||||| |||||| |||||||||| | ||||| | |||||||||||     
T  16766797 cgtgtcccggtgtcggacacgtgttgtgtccgac----accgacacgacaccgacacttgtaattacactgaattatgtgattttttcaaattattagct 16766702  T
Q  285 gtgtc 289  Q
    |||||    
T  16766701 gtgtc 16766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 26562755 - 26562689
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||  ||||| |||||||| |||||||||| | ||||||| ||||| |||||||||||    
T  26562755 accgacacgacatcgacacatataattacactgaattatgtgattttctcaaatttttagcagtgtc 26562689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 8389485 - 8389530
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||    
T  8389485 tataattacactgaattatatgattttcttaaattattagtagtgt 8389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 17411876 - 17411917
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattat 279  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  17411876 acacatataattatactgaattatatgattttcttaaattat 17411917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 34895028 - 34895085
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||| ||||||||||| ||| |||| |||||||| ||||||||||| |||||||||    
T  34895028 ccgacatgacactgacacctatgattacactgaattgtataattttctcaaattatta 34895085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 282
Target Start/End: Complemental strand, 9522991 - 9522898
Alignment:
Q  185 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||| ||||| |||||||| | |||| ||    |||||||| |||| ||||||| |||||| |||||||||| | ||||| ||||||||||||    
T  9522991 cgtgtctcggtgtcggacacgtgtcggatccgac----accgacacaacaccgacacttgtaattacactgaattatgtgatttttttaaattattag 9522898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 28715354 - 28715290
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| ||||||| |||||| |||||||||| | ||||| | ||||||||||| ||||||||||    
T  28715354 cgacaccgacacttgtaattacactgaattatgtcattttttcaaattattagccgtgtcagtgt 28715290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 33817995 - 33817900
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattagcagtgtcagtgtt------gtgtccggtgtctgtatctgtatccgtgcttcatagt 332  Q
    |||||||| ||||||||||  ||||||||  |||||||||| |||||||||||      ||||||||||||  |  ||||||||||||||||||||    
T  33817995 tataattacactgaattatgaaattttctccaattattagcggtgtcagtgttcgtgccgtgtccggtgtccatgactgtatccgtgcttcatagt 33817900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 34197173 - 34197125
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaa 275  Q
    ||||||||| |||||||||||||| |||||||||||| | |||||||||    
T  34197173 acacgacaccgacacttataattacactgaattatatcactttcttaaa 34197125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 7973716 - 7973665
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaatta 278  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||| ||||||||    
T  7973716 acacgacaccgacacttataattacacttaattatgtaatttttttaaatta 7973665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 7977830 - 7977889
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||||| |||||| |||||||||| ||||||| | ||||||||||| |||||    
T  7977830 cgacaccgacacttgtaattacactgaattatgtaattttttcaaattattagctgtgtc 7977889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Complemental strand, 14721292 - 14721249
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattatta 281  Q
    |||| |||||||||| |||||||| |||||||||||||||||||    
T  14721292 acacatataattatagtgaattatgtaattttcttaaattatta 14721249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 19040411 - 19040352
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||| |||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  19040411 cgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtc 19040352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 21924935 - 21924994
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||| |||||||| |||||||||| | || |||| |||||||||||||||||    
T  21924935 cgacaccgacacatataattacactgaattatttgatattctcaaattattagcagtgtc 21924994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 31384982 - 31384927
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||    
T  31384982 acacgacactgacacttgtaattacactgaattatgtgattttttcaaattattag 31384927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 3398680 - 3398619
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||| || ||||||||||| |||||||||||| ||||| | ||||||||||| |||||    
T  3398680 acacgacaccgatacttataattacactgaattatatgatttt-tcaaattattagctgtgtc 3398619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 7265593 - 7265651
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    |||||| ||||| |||||||| |||||||||| | ||||||| ||||||||||| ||||    
T  7265593 cgacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgt 7265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 7938174 - 7938116
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| |||||||||||||| ||| |||||||| ||||| | ||||||||||| |||||    
T  7938174 gacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtc 7938116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 9107363 - 9107429
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| ||||||| |||||| |||||||| | | ||||| | ||||||||||| |||||    
T  9107363 accgacacgacaccgacacttgtaattacactgaattttgtgattttttcaaattattagctgtgtc 9107429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 9658925 - 9658879
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||| |||||||||| | ||||||||||||||||||| |||||    
T  9658925 tataattacactgaattatgtgattttcttaaattattagcggtgtc 9658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 20576628 - 20576686
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||||||||||  ||||||||||||| ||||||||||  ||||||||  ||||||||||    
T  20576628 cgacacgacaccaacacttataattacactgaattatgcaattttctcgaattattagc 20576686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 7086858 - 7086797
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtg 287  Q
    ||||| |||| ||||| |||||||| ||| |||||| | ||||||| |||||||||||||||    
T  7086858 gacactacaccgacacatataattacactaaattatgtgattttctcaaattattagcagtg 7086797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 7377975 - 7377930
Alignment:
Q  285 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcata 330  Q
    ||||| |||||||||||||||||||  || ||||||||||||||||    
T  7377975 gtgtctgtgttgtgtccggtgtctgggtccgtatccgtgcttcata 7377930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 13364707 - 13364764
Alignment:
Q  232 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||| ||||| ||| |||| |||||||||||| ||||||| ||||||| |||||||||    
T  13364707 acaccgacacatatgattacactgaattatatgattttctcaaattataagcagtgtc 13364764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 1681742 - 1681702
Alignment:
Q  291 gtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||| |||| |||||||||| ||||||||||||||||||||    
T  1681742 gtgtcgtgttcggtgtctgtgtctgtatccgtgcttcatag 1681702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 16111751 - 16111795
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattt 268  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||    
T  16111751 ccgacacgacactgacacctataattacactaaattatgtaattt 16111795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 32299259 - 32299219
Alignment:
Q  291 gtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    ||||| |||| ||||||||| ||||||||||||||||||||    
T  32299259 gtgttatgtctggtgtctgtgtctgtatccgtgcttcatag 32299219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 34073340 - 34073400
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||||| ||| | |||||||| ||||||||||   ||||||| |||||||||||    
T  34073340 accgacacgacaccgacccatataattacactgaattatgagattttctcaaattattagc 34073400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 56988 - 56932
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattat 279  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||| |||||||    
T  56988 accgacacgacactgacacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 63831 - 63774
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    ||||| ||||||| |||||  |||||||||| ||||||||| ||||||||||| ||||    
T  63831 gacaccgacacttgtaattgcactgaattatgtaattttctcaaattattagcggtgt 63774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 25817566 - 25817494
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtca 290  Q
    |||| ||||||| || |||||||| |||||| ||||||||| |||| ||||| ||||||||||||||||||||    
T  25817566 ctgacaccgacatgatactgacacatataatcatactgaatcatatgatttttttaaattattagcagtgtca 25817494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 39698607 - 39698539
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    ||||||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  39698607 accgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcag 39698539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 331
Target Start/End: Original strand, 6471886 - 6471996
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt---tg---tgtccggtgtctgtatctgtatcc 320  Q
    |||||||||  |||| |||||||| |||||||||| | ||||||| ||||||||||| ||||||||||   ||   |||||||| ||||| |||||| ||    
T  6471886 acacgacacccacacatataattacactgaattatgtgattttctcaaattattagccgtgtcagtgtccgtgtcatgtccggtttctgtgtctgtaacc 6471985  T
Q  321 gtgcttcatag 331  Q
    |||||||||||    
T  6471986 gtgcttcatag 6471996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 32630735 - 32630796
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||||||||| |||||||| | |||||||||||||||||| ||||||||| | |||||||    
T  32630735 cgacactgacacatataattacattgaattatataattttctcaaattattatcggtgtcag 32630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 22423805 - 22423873
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    ||||||||||||| ||||  |||||||||| |||||||| | ||||||| |||||||||| ||||||||    
T  22423805 accgacacgacaccgacatatataattatattgaattatgtgattttctcaaattattagtagtgtcag 22423873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 289
Target Start/End: Complemental strand, 18592173 - 18592073
Alignment:
Q  185 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagca 284  Q
    |||||| |||||||  ||||||||||| ||| ||    ||||||||||||| | ||| |||||||| | |||||||| ||||||||||||| |||||||     
T  18592173 cgtgtcccgatgtcagacacgtgttgtgtccgac----accgacacgacaccggcacatataattacattgaattatgtaattttcttaaaatattagcg 18592078  T
Q  285 gtgtc 289  Q
    |||||    
T  18592077 gtgtc 18592073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 12641781 - 12641682
Alignment:
Q  178 aattaaacgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacactgacacttataattatactgaattatataattttcttaaatt 277  Q
    ||||| |||||||||  ||||||||||||||||| ||    ||| ||| ||||||||||||||| |  ||||||||| |||||| | ||||| |||||||    
T  12641781 aattagacgtgtctccgtgtcgaacacgtgttgtgtc----tgacaccaacacgacactgacacgtgcaattatactaaattatgtgatttttttaaatt 12641686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 25888285 - 25888353
Alignment:
Q  222 taccgacacgacactgacacttataattatactgaattatataattttctt--aaattattagcagtgt 288  Q
    |||||||||||||| || ||||||||||| |||||||||||| ||||| ||  |||||||||| |||||    
T  25888285 taccgacacgacacggagacttataattacactgaattatatgattttttttaaaattattagtagtgt 25888353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 36838605 - 36838544
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    ||||||||| ||||| |||||||| ||| |||||| ||||||||| ||||||||||| ||||    
T  36838605 acacgacaccgacacatataattacactaaattatgtaattttctcaaattattagcggtgt 36838544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 15410443 - 15410507
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||  |||| ||| |||| ||||||| |||||||||||||||||||||||| |||||    
T  15410443 cgacacaacaccaacacatatgattacactgaatcatataattttcttaaattattagcggtgtc 15410507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 25863256 - 25863212
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||    
T  25863256 gacacttataattacactgaattatatcattttctcaaattatta 25863212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 41091253 - 41091321
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||  ||||| |||||||| |||||||||| | ||||||| |||| |||||||||||| ||||    
T  41091253 gacacgacatcgacacatataattacactgaattatgtgattttctcaaatcattagcagtgtccgtgt 41091321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 3966566 - 3966503
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||| ||||| |||||||| |||||||| | | ||||||| ||||||||||| |||||    
T  3966566 gacacgacaccgacacatataattacactgaattgtgtgattttctcaaattattagcggtgtc 3966503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 21542096 - 21542037
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||||| ||||||| |||||| |||||||||| | || || ||||||||||||    
T  21542096 accgacacgacaccgacacttgtaattacactgaattatgttatctttttaaattattag 21542037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 39205943 - 39205880
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||  |||| |||||||| ||  |||||||| ||||||| |||||||||||||||||    
T  39205943 gacacgacaccaacacatataattacacctaattatatgattttctcaaattattagcagtgtc 39205880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 43001851 - 43001800
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| |||||| |||||||||| ||||||| | |||||||||||||||||    
T  43001851 acacttgtaattacactgaattatgtaattttttcaaattattagcagtgtc 43001800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 2236811 - 2236848
Alignment:
Q  256 aattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2236811 aattatataattttcttaaattattagc-gtgtcagtgt 2236848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 6035548 - 6035483
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| ||||  |||||||| |||||||||||| | ||||| ||||||||||| |||||    
T  6035548 accgacacgacaccgacaaatataattacactgaattatatta-tttctcaaattattagcggtgtc 6035483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 7677771 - 7677705
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| ||||||| |||||  |||||||||| | ||||| | ||||||||||| |||||    
T  7677771 accgacacgacaccgacacttctaattgcactgaattatgtgattttttcaaattattagctgtgtc 7677705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 15382538 - 15382477
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttctt--aaattattagcagtgtc 289  Q
    |||||| ||||||| ||||||||||||||||||| ||||| ||  ||||||||||| |||||    
T  15382538 cgacaccgacacttgtaattatactgaattatatgattttttttcaaattattagctgtgtc 15382477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 21522816 - 21522750
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| |||| || |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  21522816 accgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtc 21522750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 21533382 - 21533316
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||| |||| || |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  21533382 accgacacgacaccgacaattgtaattacactgaattatgttattttttaaaattattagctgtgtc 21533316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 23287350 - 23287400
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||||||||| |||||||||| |||||||| | |||||| ||||||||||    
T  23287350 gacactgacacatataattatattgaattatgtcattttcctaaattatta 23287400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 6770600 - 6770538
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||||||||||  |||| || |||||||||| | ||||||||||||||||||  ||||||||||    
T  6770600 cgacactgacac--ataagtacactgaattatgtgattttcttaaattattagttgtgtcagtgt 6770538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 7997173 - 7997217
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||||||||||| |||| ||||||| ||||||| |||||||||    
T  7997173 gacacttataattacactgtattatatcattttctcaaattatta 7997217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 12927712 - 12927660
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||  |||||||| ||| |||||||| ||||||| |||||||||||    
T  12927712 gacactgacatatataattacactaaattatatgattttctcaaattattagc 12927660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 27932279 - 27932235
Alignment:
Q  245 taattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||||    
T  27932279 taattacactgaattatgtaattttctcaaattattagcggtgtc 27932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 3490397 - 3490498
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtc--------agtgttgtgtccggtgtctgtatctgtatccgtgcttca 328  Q
    ||||||| |||||| ||||||| || || |||||| |||||||||||||||||        ||||| |||||||||||||||||| ||||||||||||||    
T  3490397 gacacttgtaattacactgaataatgtagttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccggtgtctgtatccgtatccgtgcttca 3490496  T
Q  329 ta 330  Q
    ||    
T  3490497 ta 3490498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 5376495 - 5376559
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||| ||||||| |||||| |||||||||| | ||||||||||||||||||| |||||    
T  5376495 cgacacgacaccgacacttttaattacactgaattatgttattttcttaaattattagcggtgtc 5376559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 8010280 - 8010340
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||| | |||||||||||    
T  8010280 accgacacaacatcgacacttataattatactgaattatataattttttcaaattattagc 8010340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 21038149 - 21038089
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||||||||| | ||| |||| |||||||||| |||||||||||||||||||||    
T  21038149 accgacacgacactgacgcatatgattacactgaattatgtaattttcttaaattattagc 21038089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 1486703 - 1486770
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||||||||| |||||||||||||| |||||||||| | ||||| | ||||||||||| |||||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattatgtgattttttcaaattattagctgtgtcag 1486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 34712377 - 34712440
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtg 287  Q
    |||||||||||||||||| |||||||| ||| |||||| | ||||||| |||||||||||||||    
T  34712377 ccgacacgacactgacacatataattacactaaattatgttattttctcaaattattagcagtg 34712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 7918207 - 7918263
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattag 282  Q
    |||||||||||||||| |||||||| |||||||||| | ||||||| ||||||||||    
T  7918207 gacacgacactgacacatataattacactgaattatgtgattttctcaaattattag 7918263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 9629895 - 9629959
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||| |||||||||||| | |||||||||||| ||||| | ||||||||||| |||||    
T  9629895 cgacacgacaccgacacttataatcacactgaattatatgattttatcaaattattagcggtgtc 9629959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 25361952 - 25361896
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattat 279  Q
    ||||||||||||||||||| |||||||| |||||||||| | ||||||| |||||||    
T  25361952 accgacacgacactgacacatataattacactgaattatgtgattttctcaaattat 25361896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 17754377 - 17754306
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||| |||||||||| |||| ||| |||||||||| ||||||| | ||||||||||| ||||| ||||    
T  17754377 accgacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 17754306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 29229485 - 29229434
Alignment:
Q  265 attttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgt 316  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| ||||||||    
T  29229485 attttctcaaattattagcagtgtcagtgtcgtgtccagtgtccgtatctgt 29229434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 38503386 - 38503315
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||||| ||||| ||||| |||||||| |||||| ||||| ||||||| ||||||||||| ||||| ||||    
T  38503386 accgacaggacaccgacacatataattacactgaaatatatgattttctcaaattattagcggtgtcggtgt 38503315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 17831594 - 17831640
Alignment:
Q  285 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||    
T  17831594 gtgtcagtgtcgtatccggtgtctgtgtctgtatccgtgcttcatag 17831640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 47989563 - 47989505
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||||||||||| ||||||| |||||| |||||||||| | ||||| |||||||||||    
T  47989563 accgacacgacaccgacacttgtaattacactgaattatgtgatttttttaaattatta 47989505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 22907341 - 22907390
Alignment:
Q  232 acactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||| |||||||||||||||||  |||||||||||||||| |||||||||    
T  22907341 acaccgacacttataattataccaaattatataattttctcaaattatta 22907390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 39130767 - 39130828
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||||| ||||| |||||||| ||| |||||||||||||||| |||||||||  ||||||||    
T  39130767 cgacaccgacacatataattacactaaattatataattttctaaaattattaatagtgtcag 39130828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 6612166 - 6612222
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||||||||| ||||||| |||||| |||||||||| ||||||| | |||||||||    
T  6612166 cgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 35999330 - 35999374
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattag 282  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||    
T  35999330 acacatataattatactaaattatatgattttcttaaattattag 35999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 40181930 - 40181866
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| || || |||||||| |||||||||| | ||||||| ||||||||||||||||| ||||    
T  40181930 cgacaccgatacatataattacactgaattatgtgattttctcaaattattagcagtgtctgtgt 40181866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 44482296 - 44482240
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattat 279  Q
    ||||||||||||| ||||| |||||||| |||||||||| | ||||||| |||||||    
T  44482296 accgacacgacaccgacacatataattacactgaattatgtgattttctcaaattat 44482240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 13436509 - 13436458
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||| |||||||| |||||||||| | |||| ||||||||||||||||||||    
T  13436509 acacatataattacactgaattatgtgatttccttaaattattagcagtgtc 13436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 21530748 - 21530697
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||| |||||||||||||||||  |||||||| ||||||| |||||||||    
T  21530748 cgacaccgacacttataattataccaaattatatgattttctcaaattatta 21530697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 31694703 - 31694765
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttctt--aaattattagc 283  Q
    ||||||||||||| ||||||| ||||||||||||||||| | ||||| ||  |||||||||||    
T  31694703 accgacacgacaccgacacttgtaattatactgaattatgtgattttttttcaaattattagc 31694765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 37055853 - 37055912
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttcttaaattattagcagt 286  Q
    |||||| ||||| |||| |||||| ||| |||||| ||||||||| ||||||||||||||    
T  37055853 acacgatactgatacttgtaattacactaaattatgtaattttctcaaattattagcagt 37055912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 41877470 - 41877529
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||||| |||||| ||| |||||| ||||||||| ||||||||||| |||||    
T  41877470 cgacaccgacacttgtaattacactaaattatgtaattttctcaaattattagcggtgtc 41877529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 52903308 - 52903257
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||| ||||| |||||||| |||||||||||| ||||| |||||||||||    
T  52903308 cgacaccgacacatataattacactgaattatatgattttattaaattatta 52903257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 5927340 - 5927398
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    |||||||||||||| |||||| | | |||||||| ||||| | ||||||||||||||||    
T  5927340 cgacactgacacttgtaattacattaaattatatgattttttcaaattattagcagtgt 5927398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 22881679 - 22881725
Alignment:
Q  285 gtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||||||||| |||||||||||| || ||| ||||||||||||||||    
T  22881679 gtgtcagtgtcgtgtccggtgtccgtgtctatatccgtgcttcatag 22881725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 28674846 - 28674808
Alignment:
Q  243 tataattatactgaattatataattttcttaaattatta 281  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  28674846 tataattatactgaattatgtaattttctcaaattatta 28674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 36878519 - 36878461
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| ||||| |||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtc 36878461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 52284755 - 52284697
Alignment:
Q  237 gacacttataattatactgaattata-taattttcttaaattattagcagtgtcagtgt 294  Q
    ||||||| |||||||||||||||||| |  |||| ||||||||||||| ||||||||||    
T  52284755 gacacttgtaattatactgaattatatttttttttttaaattattagctgtgtcagtgt 52284697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 5944347 - 5944287
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttctt--aaattattagc 283  Q
    ||||||||||| |||||||||||||| |||||||||| | ||||| ||  |||||||||||    
T  5944347 cgacacgacaccgacacttataattacactgaattatgtgattttttttcaaattattagc 5944287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 35919270 - 35919307
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattat 261  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  35919270 ccgacacgacacggacacttataattacactgaattat 35919307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 113363 - 113299
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||  |||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  113363 cgacacgacacctacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 113299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 48148034 - 48148098
Alignment:
Q  227 acacgacactgacacttataattatactgaattatataattttctt-aaattattagcagtgtca 290  Q
    ||||||||| ||||  |||||||| |||||||||||| ||||| || ||||||||||| ||||||    
T  48148034 acacgacaccgacatatataattacactgaattatatgatttttttaaaattattagcggtgtca 48148098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 8729 - 8666
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||| ||||||||||||||||||||| ||| | |||||| ||||||||||| ||||||    
T  8729 gacacgacaccgacacttataattatactgaactatgtgattttcctaaattattagaagtgtc 8666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 331
Target Start/End: Complemental strand, 19312450 - 19312289
Alignment:
Q  170 acttctccaattaaacgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacactgacacttataattatactgaattatataa---- 265  Q
    |||||||  |||| |||||||||| ||||| |||||||| |||||| ||    | ||||||||||| || ||||||||||| ||||||| || | |        
T  19312450 acttctcagattagacgtgtctcggtgtcggacacgtgtcgtatccgac----aacgacacgacaccgatacttataattacactgaatcatgtgatttt 19312355  T
Q  266 ttttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||| ||||||||||||| ||||| |||| ||||||  |||| || ||| ||||||||||||||||    
T  19312354 tttttttaaattattagctgtgtcggtgtcgtgtccaatgtccgtgtctctatccgtgcttcatag 19312289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 37203315 - 37203222
Alignment:
Q  238 acacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||||| |||||| ||| |||||| | ||||| | ||||||||||| ||||| |||| |||||||||||| || ||  ||||||||||||||||    
T  37203315 acacttgtaattacactaaattatgtcattttttcaaattattagccgtgtctgtgtcgtgtccggtgtccgtgtccatatccgtgcttcatag 37203222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 30838273 - 30838213
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagt 286  Q
    |||||||||| || ||||||||||| ||| |||||||||||||| | ||||||||||||||    
T  30838273 gacacgacaccgatacttataattacactaaattatataattttatcaaattattagcagt 30838213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 54580023 - 54580107
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt-tgtgtccggtgtctgtatc 313  Q
    |||||| |||||||||||||| |||||||||| | ||||| | ||||||||||  ||||||| ||  ||||||||||||||||||    
T  54580023 cgacaccgacacttataattacactgaattatgtgattttttcaaattattagttgtgtcagcgtccgtgtccggtgtctgtatc 54580107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 56257994 - 56257933
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||| |||||  ||||||| |||||||||||| ||||||| |||||||||||||||||    
T  56257994 gacacgacacagacac--ataattacactgaattatatgattttctcaaattattagcagtgtc 56257933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 51701324 - 51701253
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||||||| |||||| |||||| ||| |||||| ||||||| | ||||||||||| ||||| ||||    
T  51701324 accgacacgacactaacacttgtaattacactcaattatgtaattttttcaaattattagctgtgtccgtgt 51701253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 3144659 - 3144753
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    ||||| ||| |||| ||| |||||||| ||||||| ||||||||| | ||||  |||| ||| |||||||| || ||||| ||||||||||||||    
T  3144659 gacacctatgattacactaaattatatcattttctgaaattattatccgtgtaggtgtcgtgcccggtgtccgtgtctgtgtccgtgcttcatag 3144753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 35952612 - 35952674
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtg 287  Q
    |||||||||||||| || |||||||| | |||||||||| ||||| | |||||||||||||||    
T  35952612 cgacacgacactgatacatataattacattgaattatatgattttatcaaattattagcagtg 35952674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 1213228 - 1213280
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtca 290  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  1213228 gacacatataattacactgaattatataatttt-ttaaattattaacagtgtca 1213280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 3947760 - 3947825
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||||||||||| |||||| ||||||||||   ||||| | ||||||||||| |||||    
T  3947760 ccgacacgacactgacacttgtaattacactgaattatgcgattttttcaaattattagctgtgtc 3947825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 30982866 - 30982931
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    |||| ||||||||||||| |||||||||||||| |||||| ||| | ||||||| |||| ||||||    
T  30982866 ctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaatcattagc 30982931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 848009 - 847957
Alignment:
Q  231 gacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||| ||||||| |||||||| |||||||| ||||||||| |||||||||||    
T  848009 gacaccgacacttgtaattatagtgaattatgtaattttctcaaattattagc 847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 9825607 - 9825505
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgt 322  Q
    ||||||||||||||||||  |||||||| ||  |||||||| ||||| |||||||| |||| ||||     || ||||||||||| ||||| ||||||||    
T  9825607 accgacacgacactgacatatataattacacataattatatgattttgttaaattagtagc-gtgt-----ttttgtccggtgtcggtatccgtatccgt 9825514  T
Q  323 gcttcatag 331  Q
    |||| ||||    
T  9825513 gcttaatag 9825505  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 13134514 - 13134450
Alignment:
Q  225 cgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||  ||||| |||||||| ||| |||||| | ||||||||||||||| |||||||||    
T  13134514 cgacacgacatcgacacatataattacactaaattatgtgattttcttaaattataagcagtgtc 13134450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 26504306 - 26504358
Alignment:
Q  237 gacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||| |||||||| |||||| ||| | |||||||||||||||||||||||||    
T  26504306 gacacatataattacactgaactatttgattttcttaaattattagcagtgtc 26504358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 35161095 - 35161031
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||| |||| ||||||||||| |||||||||| | |||||||| ||||| |||||||||| ||||    
T  35161095 cgactctgatacttataattacactgaattatgtgattttcttgaattagtagcagtgtcggtgt 35161031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 7727961 - 7728036
Alignment:
Q  232 acactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtc 307  Q
    |||| ||||| |||||||||||||||| || | ||||||| || |||||| | ||||| |||| ||||||||||||    
T  7727961 acaccgacacctataattatactgaatcatgtcattttctcaacttattatcggtgtctgtgtcgtgtccggtgtc 7728036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 8423718 - 8423777
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| |||| ||||||||| |||||||||| | ||||||| ||||||||||| |||||    
T  8423718 cgacaccgacatttataattacactgaattatgtgattttctcaaattattagcggtgtc 8423777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 23292986 - 23293045
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||| ||||||| ||||||||||||||||| | ||||| | ||||||||||| |||||    
T  23292986 cgacaccgacacttgtaattatactgaattatgtgattttttcaaattattagctgtgtc 23293045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 37698758 - 37698719
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattag 282  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  37698758 tataattacactgaattatataattttctcaaattattag 37698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 38847012 - 38847071
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||||||| |||||| ||||||| |||| ||||| | ||||||||||| |||||    
T  38847012 cgacactgacacttgtaattacactgaataatatgattttttcaaattattagctgtgtc 38847071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 49652985 - 49653024
Alignment:
Q  243 tataattatactgaattatataattttcttaaattattag 282  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  49652985 tataattatactgaattatctgattttcttaaattattag 49653024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 20179401 - 20179364
Alignment:
Q  244 ataattatactgaattatataattttcttaaattatta 281  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  20179401 ataattatactgaattatatgattttcttaaactatta 20179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 2361975 - 2362039
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||| ||||||| |||||| ||| |||||| ||||||| | ||||||||||| ||||| ||||    
T  2361975 cgacaccgacacttttaattacactaaattatgtaattttttcaaattattagctgtgtcggtgt 2362039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 10499336 - 10499383
Alignment:
Q  283 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||||||||||| ||||| |||||| |||||||||||| ||||||||||    
T  10499336 cagtgtcagtgt-gtgtctggtgtccgtatctgtatccatgcttcatag 10499383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 15659754 - 15659818
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgt 288  Q
    ||||||||||||  |||| |||||||| || |||||||   ||||||| ||||||||||||||||    
T  15659754 ccgacacgacaccaacacatataattacaccgaattatgagattttctcaaattattagcagtgt 15659818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 20238 - 20172
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    ||||||||||||||||||||| |||||| |||||||||| | ||||| | ||||||||||| |||||    
T  20238 accgacacgacactgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtc 20172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 160 - 291
Target Start/End: Original strand, 44459 - 44586
Alignment:
Q  160 aagcacagatacttctccaattaaacgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacactgacacttataattatactgaatt 259  Q
    ||||||||| |||||||  ||||| | |||| |  ||||| ||||||||||| ||||||    |||||||||| || ||||| |||||||| ||||||||    
T  44459 aagcacagacacttctcagattaaccatgtcccagtgtcggacacgtgttgtgtccaac----accgacacgataccgacacatataattacactgaatt 44554  T
Q  260 atataattttcttaaattattagcagtgtcag 291  Q
    || | ||||||| ||||| ||||| |||||||    
T  44555 atgtgattttctcaaatttttagcggtgtcag 44586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 68235 - 68293
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||| ||||||||||||| |||||||||||| |||||||| ||||||| |||||||||    
T  68235 accgatacgacactgacacctataattatactaaattatatgattttctcaaattatta 68293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 126781 - 126679
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgttgtgtccggtgtctgtatctgtatccgt 322  Q
    ||||||||||||||||||  |||||||| ||  |||||||| ||||| |||||||| |||| ||||     || ||||||||||| ||||| ||||||||    
T  126781 accgacacgacactgacatatataattacacataattatatgattttgttaaattagtagc-gtgt-----ttttgtccggtgtcggtatccgtatccgt 126688  T
Q  323 gcttcatag 331  Q
    |||| ||||    
T  126687 gcttaatag 126679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 135308 - 135376
Alignment:
Q  226 gacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||||| ||||| |||||||| || ||||||| | ||||||| ||||||||||||||||| ||||    
T  135308 gacacgacaccgacacatataattacacagaattatgtgattttctcaaattattagcagtgtcggtgt 135376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 1101 - 1030
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    |||||||| |||||||||| |||| ||| |||||||||| ||||||| | ||||||||||| ||||| ||||    
T  1101 accgacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 3808 - 3900
Alignment:
Q  185 cgtgtctcgatgtcgaacacgtgttgtatccaactgataccgacacgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    ||||||||||||||| ||| |||| || ||| ||    ||| ||||||||||||||||| |||||| |||||||||| | ||||| |||||||||||    
T  3808 cgtgtctcgatgtcggacatgtgtcgtgtccgac----accaacacgacactgacacttgtaattacactgaattatgtgatttttttaaattatta 3900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 92862 - 92807
Alignment:
Q  234 actgacacttataattatactgaattatataattttcttaaattattagcagtgtc 289  Q
    |||||||||| |||||| |||||||||| ||||||||| ||||||||||| |||||    
T  92862 actgacacttgtaattacactgaattatgtaattttctcaaattattagcggtgtc 92807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 53246 - 53189
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattatt 280  Q
    ||||||||| ||| |||||||||||||| |||||||||| | ||||||| ||||||||    
T  53246 accgacacggcaccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 576 - 540
Alignment:
Q  294 ttgtgtccggtgtctgtatctgtatccgtgcttcata 330  Q
    |||||||||||||| ||||||||||||||||||||||    
T  576 ttgtgtccggtgtcggtatctgtatccgtgcttcata 540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 1703 - 1652
Alignment:
Q  230 cgacactgacacttataattatactgaattatataattttcttaaattatta 281  Q
    |||||| |||||||||||||||||  |||||||| ||||||| |||||||||    
T  1703 cgacaccgacacttataattataccaaattatatgattttctcaaattatta 1652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 6378 - 6307
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcagtgt 294  Q
    ||||| ||||||| ||||| |||||||| | ||||||||  |||||| | ||||||||||||||||| ||||    
T  6378 accgatacgacaccgacacatataattacattgaattatgcaattttgtcaaattattagcagtgtccgtgt 6307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 23577 - 23539
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattat 261  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  23577 accgaaacgacactgacacttataattacactgaattat 23539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 23485 - 23448
Alignment:
Q  224 ccgacacgacactgacacttataattatactgaattat 261  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  23485 ccgacacgacaccgacacttataattacactgaattat 23448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 21114 - 21041
Alignment:
Q  218 ctgataccgacacgacactgacacttataattatactgaattatataattttcttaaattattagcagtgtcag 291  Q
    |||| |||||||||| || ||||| ||||||||||| || |||| | ||||||| ||||||||| | |||||||    
T  21114 ctgacaccgacacgataccgacacatataattataccgacttatgtgattttctcaaattattaaccgtgtcag 21041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 9532 - 9484
Alignment:
Q  283 cagtgtcagtgttgtgtccggtgtctgtatctgtatccgtgcttcatag 331  Q
    |||||||  |||||||||||||||| || |||||||| |||||||||||    
T  9532 cagtgtccatgttgtgtccggtgtccgtttctgtatctgtgcttcatag 9484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 56436 - 56376
Alignment:
Q  223 accgacacgacactgacacttataattatactgaattatataattttcttaaattattagc 283  Q
    ||||||||||||||||||  |||||||| ||  |||||||| ||||| |||||||| ||||    
T  56436 accgacacgacactgacatatataattacacataattatatgattttgttaaattagtagc 56376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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