View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_140 (Length: 237)
Name: NF16091_low_140
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_140 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 47290505 - 47290300
Alignment:
| Q |
17 |
aatattttatatctcaaccatccaaataagaccttggataattctaggacttctctatggtctctagattcaaattcaaattccttaaagcatcctccat |
116 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47290505 |
aatattttacatctcaaccatccaaataagaccttggataattctaggactcctctatggtctctagattcaaattcagattccttaaagcatcctccat |
47290406 |
T |
|
| Q |
117 |
ccacattcaaattcagattcatcacacctggtggaggggaacaccaaaattcagaatcagatctcactgtaactgtagcaattatagaatggtttgaaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47290405 |
ccacattcaaattcagattcatcacacctggtggagggggacaccaaaattcagcatcagatctcactgtaactgtagcaattgcagaatggtttgaaca |
47290306 |
T |
|
| Q |
217 |
attgag |
222 |
Q |
| |
|
|||||| |
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|
| T |
47290305 |
attgag |
47290300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 39175938 - 39175814
Alignment:
| Q |
98 |
tccttaaagcatcctccatccacattcaaattcagattcatcacacctggtggaggggaacaccaaaattcagaatcagatctcactgtaactgtagcaa |
197 |
Q |
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||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||| ||||||| |
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| T |
39175938 |
tccttaatgcatcctccatccacattcaaatttagaatcatcacacctggtggagggggacaccaaaattcagcatcagttctcactaaaacagtagcaa |
39175839 |
T |
|
| Q |
198 |
ttatagaatggtttgaacaattgag |
222 |
Q |
| |
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||| |||||||||| ||||||||| |
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|
| T |
39175838 |
ttacggaatggtttgcacaattgag |
39175814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 195308 - 195269
Alignment:
| Q |
17 |
aatattttatatctcaaccatccaaataagaccttggata |
56 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
195308 |
aatattttatatctcaaccatccaaatcagaccttggata |
195269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 22894197 - 22894158
Alignment:
| Q |
17 |
aatattttatatctcaaccatccaaataagaccttggata |
56 |
Q |
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||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
22894197 |
aatattttatatctcaatcatccaaatcagaccttggata |
22894158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 19534711 - 19534678
Alignment:
| Q |
17 |
aatattttatatctcaaccatccaaataagacct |
50 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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|
| T |
19534711 |
aatattttatatctcaaccatccaaatcagacct |
19534678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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