View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_142 (Length: 234)

Name: NF16091_low_142
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_142
NF16091_low_142
[»] chr7 (7 HSPs)
chr7 (45-225)||(46706890-46707070)
chr7 (44-225)||(5289598-5289779)
chr7 (44-225)||(5310437-5310618)
chr7 (44-225)||(5302536-5302717)
chr7 (44-225)||(5284348-5284529)
chr7 (44-225)||(5315151-5315332)
chr7 (110-207)||(32530975-32531072)
[»] chr1 (3 HSPs)
chr1 (44-225)||(44128614-44128795)
chr1 (44-225)||(44132819-44133000)
chr1 (44-225)||(44141241-44141422)
[»] chr5 (7 HSPs)
chr5 (44-216)||(1505026-1505198)
chr5 (44-225)||(1492208-1492389)
chr5 (44-225)||(1478039-1478220)
chr5 (44-225)||(1482233-1482414)
chr5 (47-225)||(1486710-1486888)
chr5 (69-225)||(1499280-1499436)
chr5 (47-225)||(1509164-1509342)
[»] chr2 (1 HSPs)
chr2 (44-220)||(24163691-24163867)
[»] chr3 (3 HSPs)
chr3 (56-219)||(37863303-37863466)
chr3 (44-207)||(37859265-37859428)
chr3 (56-219)||(39030117-39030280)
[»] chr8 (1 HSPs)
chr8 (65-207)||(35250869-35251011)
[»] chr4 (1 HSPs)
chr4 (1-48)||(32833157-32833204)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 45 - 225
Target Start/End: Original strand, 46706890 - 46707070
Alignment:
Q  45 ccgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  46706890 ccgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcat 46706989  T
Q  145 gtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46706990 gtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttcactgc 46707070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 225
Target Start/End: Original strand, 5289598 - 5289779
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||    
T  5289598 accgtgccacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggca 5289697  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5289698 tgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgc 5289779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 5310618 - 5310437
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||| ||||||||||||||||    
T  5310618 accgtgccacctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaaggcccaagagttttgtgagttgataatcagctccaggca 5310519  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5310518 tgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgc 5310437  T

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Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 5302717 - 5302536
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    |||||||| |||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||| | ||||    
T  5302717 accgtgccacctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcagcttcgggca 5302618  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5302617 tgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgc 5302536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 5284529 - 5284348
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    ||||| || |||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||    
T  5284529 accgtaccacctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggca 5284430  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  5284429 tgtctacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttggccccattcttttatagccttcactgc 5284348  T

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Target: chr7; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 5315332 - 5315151
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| || ||||| |||||||| ||||| ||||||||||    
T  5315332 accgtgccacctgcaaagcacccttgttggtacatcatgtatcttttcacatatgggcgaagacctaatagtttggtgagttgataatctgctccaggca 5315233  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    |||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  5315232 tgtcaacaccacttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgc 5315151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 32530975 - 32531072
Alignment:
Q  110 aagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattc 207  Q
    |||||||| |||||||||||||| || || |||||||||||||||  ||| ||||| |  | || |||||| || || || |||||||||||||||||    
T  32530975 aagagtttagtgagttggtaatcggcacccggcatgtctacaccagaagttgtgcagaaaactacgtgggtgattttggattttggttgaccccattc 32531072  T

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Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 44128795 - 44128614
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  44128795 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggca 44128696  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  44128695 tgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgc 44128614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 44133000 - 44132819
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  44133000 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggca 44132901  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  44132900 tgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgc 44132819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 44141422 - 44141241
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  44141422 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggca 44141323  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  44141322 tgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttgactttggttgaccccattcttttatggccttcactgc 44141241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 1505198 - 1505026
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    ||||| || |||||||| || ||||| ||||||||||| ||||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  1505198 accgtcccacctgcaaaacatccttgctggtacatcatgtacctcttcacatatgggcgaagacctaagagtttggtgagttggtaatcagctccaggca 1505099  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagc 216  Q
    ||||||||||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  1505098 tgtctacaccacttgtggtgcaaacaattaagtgagtaatctttgactttggctgaccccattcttttatagc 1505026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 1492389 - 1492208
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    |||||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||  ||||||| |||||||| |||||||| ||||| || |||||||    
T  1492389 accgtgccacctgcaaaacaaccttgctggtacatcatgtatctttttacatatggacgaagacctaagagtttagtgagttgataatcggccccaggca 1492290  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    |||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  1492289 tgtctacaccgcttgtggtgcaaacgattaagtgagtaatctttgactttggttgaccccattcttttatagccttcactgc 1492208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 1478220 - 1478039
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    ||||| || |||||||| || ||||||||||||||||||||||| |||||||||||  ||||||| |||||||| ||||||||||||||||| |||||||    
T  1478220 accgtcccacctgcaaaacatccttgttggtacatcatatacctcttcacatatggacgaagacctaagagtttggtgagttggtaatcagcgccaggca 1478121  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || ||||||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||| ||| ||||    
T  1478120 tgtctacaccacttgtggtgcaaaagatcaagtgtgtaatctttgattttggttggccccattcttttatagctttcactgc 1478039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 44 - 225
Target Start/End: Complemental strand, 1482414 - 1482233
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    ||||| || ||||||||||| ||||||||||||||||| || || |||||||||||  ||||||| ||||||||||||||||||||||| || |||||||    
T  1482414 accgtcccacctgcaaagcatccttgttggtacatcatgtatctcttcacatatggacgaagacctaagagttttgtgagttggtaatcggcaccaggca 1482315  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||||||||||||| || || ||||  |||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  1482314 tgtctacaccacttgtggtacaaaatattaagtgtgtaatctttgattttggttggccccattcttttatagccttcactgc 1482233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 1486888 - 1486710
Alignment:
Q  47 gtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgt 146  Q
    ||||| ||||||||||| ||||||||||| |||||||||| ||||||||  |||  |||||| ||||||||||||||||||||||| || |||||||||     
T  1486888 gtgccccctgcaaagcatccttgttggtatatcatataccgtttcacatccgggcaaagacctaagagttttgtgagttggtaatcggcaccaggcatgc 1486789  T
Q  147 ctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    ||| ||||||  | |||||||  |||||||| |||||||||||||||||||| ||| ||||||||||||| ||| ||||    
T  1486788 ctataccactcatggtgcaaaatattaagtgtgtaatctttgactttggttggccctattcttttatagctttcactgc 1486710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 1499436 - 1499280
Alignment:
Q  69 gttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaac 168  Q
    ||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||   |||||||     
T  1499436 gttggtacatcatgtaccttttcacatatgggttaagacctaagagttttgttagttggtaatccgcaccaggcatgtctacaccactataggtgcaaaa 1499337  T
Q  169 gattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
     ||||| || ||||| |||||||| ||||||||||||||||  ||||||||| ||||    
T  1499336 aattaaatgtgtaatatttgacttcggttgaccccattcttcgatagccttcactgc 1499280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 1509342 - 1509164
Alignment:
Q  47 gtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgt 146  Q
    ||||| |||||||| || | ||||||||||||||| |||||||| ||||||||||||||||| || ||||| || ||||| |||| |||||||| ||| |    
T  1509342 gtgccacctgcaaaacacctttgttggtacatcatgtacctttttacatatgggtgaagacctaaaagtttggtaagttgataatgagctccagacatat 1509243  T
Q  147 ctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttctctgc 225  Q
    | |||||||| || ||||||| |||||| || ||||||||||| ||||| || ||||||||||||||||||||| ||||    
T  1509242 caacaccacttgtggtgcaaaagattaaatgtgtaatctttgattttggctggccccattcttttatagccttcactgc 1509164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 24163691 - 24163867
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    |||||||| |||||||| || |||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||| || |||||||    
T  24163691 accgtgccacctgcaaaacacccttgttggtacatcatatacctttttacacatgggcgaagacctaagagttttgtgagttggtaatcggcaccaggca 24163790  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagccttc 220  Q
    | |||||||||||  |||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||||    
T  24163791 tatctacaccacttatagtgcaaaatattaagtgtgtgatctttgactttggttggccccattcttttatagccttc 24163867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 219
Target Start/End: Original strand, 37863303 - 37863466
Alignment:
Q  56 gcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccac 155  Q
    ||||| ||||||||||| ||||||||||| |  |||||||| ||| ||||||||||||| |||||||| || || ||||| |||||||| || |||||||    
T  37863303 gcaaaacaaccttgttgatacatcatataacgcttcacatacgggcgaagacccaagagctttgtgagctgatagtcagcaccaggcatatccacaccac 37863402  T
Q  156 tagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagcctt 219  Q
    | || |||||||  ||||  || |||||||||||||| |||||||||||||| || ||||||||    
T  37863403 ttgtggtgcaaaaaattagatgagtaatctttgacttaggttgaccccattccttgatagcctt 37863466  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 37859265 - 37859428
Alignment:
Q  44 accgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggca 143  Q
    |||||||| || ||||| |||||||||||||||||||| || |  |||||||||||  |||| |||||||| ||||| || || || || || || ||||    
T  37859265 accgtgccaccagcaaaacaaccttgttggtacatcatgtaacgcttcacatatggacgaaggcccaagagctttgtcagctgatagtcggcaccgggca 37859364  T
Q  144 tgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattc 207  Q
    |||| || ||||| || ||||||| ||| | |||||||||||| ||||| ||||||||||||||    
T  37859365 tgtccacgccactggtggtgcaaaagatgaggtgggtaatcttggacttaggttgaccccattc 37859428  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 219
Target Start/End: Complemental strand, 39030280 - 39030117
Alignment:
Q  56 gcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccac 155  Q
    ||||| ||||||||||||||||||||||| |  || ||||||||   ||| || ||||| |||||||| || || |||||||||||||| || |||||||    
T  39030280 gcaaaacaaccttgttggtacatcatataacgctttacatatggacaaaggcctaagagctttgtgagctgatagtcagctccaggcatatcgacaccac 39030181  T
Q  156 tagtagtgcaaacgattaagtgggtaatctttgactttggttgaccccattcttttatagcctt 219  Q
    | | ||||||||  || |  || |||| | ||||||| |||||||||||||| || ||||||||    
T  39030180 ttgaagtgcaaaatatgagatgagtaaccattgacttaggttgaccccattcattgatagcctt 39030117  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 35251011 - 35250869
Alignment:
Q  65 ccttgttggtacatcatataccttttcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgc 164  Q
    |||||||||||||||||||| | ||||||  | ||  |||| || |  | ||||||||| || |||||||| |||||||| || |||||||||||| |||    
T  35251011 ccttgttggtacatcatataacgtttcaccgacggacgaagtcctagcaattttgtgagctgataatcagcaccaggcatatccacaccactagtaatgc 35250912  T
Q  165 aaacgattaagtgggtaatctttgactttggttgaccccattc 207  Q
    |||  || | ||| || ||||| ||||||||||||||||||||    
T  35250911 aaaatatgaggtgagtgatcttggactttggttgaccccattc 35250869  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32833204 - 32833157
Alignment:
Q  1 tgatttgtaagcttgcttcacaaagaagtgtaaccgaagtctaaccgt 48  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  32833204 tgatttgtaagcttgcttcacaaataactgtaaccgaagtctaaccgt 32833157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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