View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_145 (Length: 232)
Name: NF16091_low_145
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_145 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 42959940 - 42959709
Alignment:
| Q |
1 |
ctcaagctactgtcatgatgatgggcaggtatgtatagggcttactgataactc------------agtttaacgaaataagctgaaaacaatttataaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
42959940 |
ctcaagctactgtcatgatgatgggcaggtatgtatagggcttactgataactccgtttcatgaacagtttaacgaaataagctgaaaacagtttataaa |
42959841 |
T |
|
| Q |
89 |
catgttataatatattttgataagccctttcaaacacatatatgtaagtgtttatgtcattagttaagaatataaataaataataatgcttacttttaac |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42959840 |
catgttataatatattttgataagccctttcaaacacatatatgtaagtgtttatgtcattagttaagaatataaataaataataatgcttacttttaac |
42959741 |
T |
|
| Q |
189 |
gtcctaataatatatttatgtttgtcacaggt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42959740 |
gtcctaataatatatttatgtttgtcacaggt |
42959709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 11707094 - 11707142
Alignment:
| Q |
64 |
aaataagctgaaaacaatttataaacatgttataatatattttgataag |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
11707094 |
aaataagctgaaaacaacttataaacatgtcataatctattttgataag |
11707142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35608121 - 35608160
Alignment:
| Q |
1 |
ctcaagctactgtcatgatgatgggcaggtatgtataggg |
40 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
35608121 |
ctcaagctactgtcatgatgatgggcaggcatgtacaggg |
35608160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 35064893 - 35064923
Alignment:
| Q |
63 |
gaaataagctgaaaacaatttataaacatgt |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
35064893 |
gaaataagctgaaaacaatttataaacatgt |
35064923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University