View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16091_low_148 (Length: 230)
Name: NF16091_low_148
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_148 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 8002962 - 8003133
Alignment:
| Q |
48 |
gtcctgttccccagtaataacaagacacatgtcttttttaattaaaaattaaagaaatagtttatcttcttcattgatctgtctcaattgtttttacgca |
147 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8002962 |
gtcctgttccccaataataacaagacacatgtcttttttaattaaaaattaaagaaatagtttatcttcttcattgatctgtctcaattgtttttacgca |
8003061 |
T |
|
| Q |
148 |
gcaaagtcagtctcactttcttcttacctctttcacatggttcttcttggataaattggctatatccttctt |
219 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003062 |
gcagagtcagtctcaatttcttcttacctctttcacatggttcttcttggataaattggctatatccttctt |
8003133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7989458 - 7989509
Alignment:
| Q |
1 |
tatttaaaaaaggagaaaacttaggtaaagtaccatatgtgctggtggtcct |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7989458 |
tatttaaaaaaggagaaaacttaggtaaagtaccatatgtgctggtggtcct |
7989509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 30518185 - 30518109
Alignment:
| Q |
9 |
aaaggagaaaacttaggtaaagtaccatatgtgctggtggtcctgttccccagtaataacaagacacatgtcttttt |
85 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| |||||||||| ||||||||| |||| |||| |||| |
|
|
| T |
30518185 |
aaaggagaaaacttaggtaaattaccttatgtgctggtggtactgttccccaataataacaatacacgtgtcctttt |
30518109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 51033023 - 51032951
Alignment:
| Q |
7 |
aaaaaggagaaaacttaggtaaagtaccatatgtgctggtggtcctgttccccagtaataacaagacacatgt |
79 |
Q |
| |
|
|||||||| |||||||||||| ||||||| | |||||| |||| |||||||||| ||| | || ||||||||| |
|
|
| T |
51033023 |
aaaaaggacaaaacttaggtacagtaccacaagtgctgttggtactgttccccaataaaatcatgacacatgt |
51032951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 30517608 - 30517655
Alignment:
| Q |
11 |
aggagaaaacttaggtaaagtaccatatgtgctggtggtcctgttccc |
58 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||||| |||||||| |
|
|
| T |
30517608 |
aggagaaaacttaggtacagtaccttgtgtgctggtggtactgttccc |
30517655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 8003639 - 8003603
Alignment:
| Q |
13 |
gagaaaacttaggtaaagtaccatatgtgctggtggt |
49 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
8003639 |
gagaaaacttaggtacagtaccttatgtgctggtggt |
8003603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 56236326 - 56236289
Alignment:
| Q |
6 |
aaaaaaggagaaaacttaggtaaagtaccatatgtgct |
43 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
56236326 |
aaaataggagaaaacttaggtaaagtaccttatgtgct |
56236289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University