View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_156 (Length: 220)
Name: NF16091_low_156
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_156 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 44955975 - 44956169
Alignment:
| Q |
17 |
agatcctaatggtgatccaatgggagctttttggttacaaggtgttcacatgattcattgttcctataatagcttatggatgggacaaatgattcgacct |
116 |
Q |
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| T |
44955975 |
agatcctaatggtgatccaatgggagctttttggttacaatgtgttcacatgattcattgttcctataatagcttatggatgggacaaatgattcgacct |
44956074 |
T |
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| Q |
117 |
gattgggacatgtttcagtcggaccatatttgtgctaaatttcatgctggctcaagagctatttgtggtggtccaatttatttgagtgatgatgt |
211 |
Q |
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| T |
44956075 |
gattgggacatgtttcagtcggaccatatttgtgctaaatttcatgctggctcaagagctatttgtggtggtccaatttatttgagtgatgatgt |
44956169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 43563079 - 43562890
Alignment:
| Q |
17 |
agatcctaatggtgatccaatgggagctttttggttacaaggtgttcacatgattcattgttcctataatagcttatggatgggacaaatgattcgacct |
116 |
Q |
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| T |
43563079 |
agatcctaatggtgatccaatgggagctttctggttacaaggtgtacacatgattcattgttcctacaatagcttatggatgggacaaatgattcgacct |
43562980 |
T |
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| Q |
117 |
gattgggacatgtttcagtcggaccatatttgtgctaaatttcatgctggctcaagagctatttgtggtggtccaatttatttgagtgat |
206 |
Q |
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| T |
43562979 |
gattgggacatgttccaatctaaccatgtttgtgctaaatttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgat |
43562890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 64 - 211
Target Start/End: Original strand, 26171613 - 26171754
Alignment:
| Q |
64 |
acatgattcattgttcctataatagcttatggatgggacaaatgattcgacctgattgggacatgtttcagtcggaccatatttgtgctaaatttcatgc |
163 |
Q |
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| T |
26171613 |
acatgattcattgttcg---aatagcttatggatgggacaattgattcaacctgattgggacatgttccagt---aacatatttgtgccaaatttcatgc |
26171706 |
T |
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| Q |
164 |
tggctcaagagctatttgtggtggtccaatttatttgagtgatgatgt |
211 |
Q |
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| T |
26171707 |
aggttcaagagctatctgtggtggtccagtttatttgaatgataatgt |
26171754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 36430927 - 36430733
Alignment:
| Q |
17 |
agatcctaatggtgatccaatgggagctttttggttacaaggtgttcacatgattcattgttcctataatagcttatggatgggacaaatgattcgacct |
116 |
Q |
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| T |
36430927 |
agatcctaatggtgattcaatgggagttttttggttacaaggtgtacacatgattcattgttcctacaatagcttatggatgggacaaatgattcaacct |
36430828 |
T |
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| Q |
117 |
gattgggacatgtttcagtcggaccatatttgtgctaaatttcatgctggctcaagagctatttgtggtggtccaatttatttgagtgatgatgt |
211 |
Q |
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| T |
36430827 |
gattgggacatgttccaatcagaccatatttgtgccaaatttcatgcaggttcaagagctatctgtggtggtccagtttatttgagtgataatgt |
36430733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 43975928 - 43976110
Alignment:
| Q |
29 |
tgatccaatgggagctttttggttacaaggtgttcacatgattcattgttcctataatagcttatggatgggacaaatgattcgacctgattgggacatg |
128 |
Q |
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| T |
43975928 |
tgatccaatgggagctttttggttacaagggctacacatgattcattgttcctacaatagcttatggatgggacaaatgattcaacctgattgggacatg |
43976027 |
T |
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| Q |
129 |
tttcagtcggaccatatttgtgctaaatttcatgctggctcaagagctatttgtggtggtccaatttatttgagtgatgatgt |
211 |
Q |
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| T |
43976028 |
tttcaatcagaccatatttgtgccaaatatcatgcaggttcaagagctatttgtggtggtccaatttatttgagtgataatgt |
43976110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 16225082 - 16224958
Alignment:
| Q |
84 |
aatagcttatggatgggacaaatgattcgacctgattgggacatgtttcagtcggaccatatttgtgctaaatttcatgctggctcaagagctatttgtg |
183 |
Q |
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| T |
16225082 |
aatagcttatggataggacaaat---tcaacctgattgggacatgttccaataagaccatatttgtgccaaatttcatgcaggttcaagagctatctgtg |
16224986 |
T |
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| Q |
184 |
gtggtccaatttatttgagtgatgatgt |
211 |
Q |
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| T |
16224985 |
gtggtccagtttatttgagtgataatgt |
16224958 |
T |
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