View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_157 (Length: 220)
Name: NF16091_low_157
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_157 |
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Alignment Details
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 26508931 - 26509006
Alignment:
| Q |
134 |
ggttattctaaactagtctctgagacacttgttaagaaaataaaaacaataatgctacttctcgcagaataatcta |
209 |
Q |
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| T |
26508931 |
ggttattctaaattagtctctgagacacttgttaaaaaaataaaaacaataatgctacttctcgcagaatattcta |
26509006 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 26508814 - 26508852
Alignment:
| Q |
18 |
aatataagataagagtaagctaa-tccatcacaagatac |
55 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
26508814 |
aatataagataagagtaagctaattccatcacaagatac |
26508852 |
T |
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