View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_159 (Length: 218)

Name: NF16091_low_159
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_159
NF16091_low_159
[»] chr4 (9 HSPs)
chr4 (1-212)||(4342593-4342804)
chr4 (1-174)||(4323242-4323415)
chr4 (1-174)||(4358099-4358272)
chr4 (1-175)||(4126577-4126751)
chr4 (1-175)||(4333240-4333414)
chr4 (1-175)||(4350919-4351093)
chr4 (1-175)||(4135684-4135858)
chr4 (1-176)||(4330173-4330351)
chr4 (49-173)||(25567613-25567737)
[»] chr6 (19 HSPs)
chr6 (1-183)||(5105012-5105200)
chr6 (1-174)||(5184092-5184265)
chr6 (1-174)||(5174555-5174728)
chr6 (1-174)||(5368143-5368322)
chr6 (49-174)||(5423436-5423561)
chr6 (1-175)||(5093729-5093903)
chr6 (54-174)||(5356815-5356935)
chr6 (1-175)||(5149102-5149276)
chr6 (49-174)||(5069265-5069390)
chr6 (1-174)||(5159641-5159814)
chr6 (50-174)||(5075920-5076044)
chr6 (1-181)||(5341376-5341556)
chr6 (1-126)||(5431144-5431269)
chr6 (1-174)||(5276394-5276567)
chr6 (88-174)||(5394732-5394818)
chr6 (50-174)||(5444775-5444899)
chr6 (55-175)||(5692419-5692539)
chr6 (1-174)||(5134045-5134218)
chr6 (1-38)||(5348236-5348273)
[»] chr3 (1 HSPs)
chr3 (52-174)||(48015496-48015618)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-148)||(10805-10952)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4342804 - 4342593
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4342804 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgactccgaccggataatcagcaa 4342705  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaacataaaataaagtcaaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4342704 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaacataaaataaagtcaagat 4342605  T
Q  201 atcttcatctca 212  Q
    ||||||||||||    
T  4342604 atcttcatctca 4342593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4323242 - 4323415
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || || |||| ||||||||    
T  4323242 ccccacatccctagtagtagaacatcatttgtttgttgagtgtctagaagttgaatcatatcttgcactcgagaatcgatacccacaggattatcagcaa 4323341  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
     |||||||||||||||||| || |||||| ||||||||||||||||||| ||||||||||||||||| ||||||    
T  4323342 cgaacaagtctgtcttgtccagtaaacgtgtaacattttcaacaatatccttgataacctcactttcgttccta 4323415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 4358272 - 4358099
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||| |||| |||||||||||||| ||||  ||||||||||||||||||||||||||||||| ||| || |||| ||||||||    
T  4358272 ccccacatccctagtagtagagcatcgtttgattgttgagtttctaggagttgaatcatatcttgcactcgagaatcgactcctactggattatcagcaa 4358173  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||    
T  4358172 tgaacaagtctgtcttgtcaagcaaacgagtaacattttcaacaatatccctgataacctcactttcattccta 4358099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4126577 - 4126751
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |||| ||||||||    
T  4126577 ccccacatccccagcagtagaacatcatttgactgttgagtgtctagaagttgaatcatatcttgcactcgagattcgactccgacaggattatcagcaa 4126676  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||| ||| |||||||    
T  4126677 tgaacaagtctgtcttgtcaagcaaatttgtaacattttcaacaatatccttgataacctcacattcgttcctat 4126751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 4333414 - 4333240
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||| ||||| |||||||| | ||||||| |||||||||||| |||||||||||||||||| |||||||| |||| ||| ||||||| ||||||||    
T  4333414 ccccacattcctagcagtagaactttatttgatagttgagtgtctagaagttgaatcatatcttgtactcgagattcgactcctaccggatgatcagcaa 4333315  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||| |||||||    
T  4333314 tgaacaagtcagtcttgtcaagcaaacgtgcaacattttcaacaatatccttgatgacctcactttcgttcctat 4333240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 4351093 - 4350919
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||| |||||||||||| |||||||| |||||||||| ||||| |||||||||||||||  |||| |||| ||| || |||| |||| |||    
T  4351093 ccccacatccctattagtagaacatcttttgattggtgagtgtctagaagtttaatcatatcttgcacctgagattcgactcccacaggattatcaacaa 4350994  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    |||| |||||| ||||||||| ||||||| ||| ||||||||||||| | |||||||||||||||||||||||||    
T  4350993 tgaataagtctatcttgtcaaacaaacgtgtaatattttcaacaatacccttgataacctcactttcattcctat 4350919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 4135684 - 4135858
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||||||||||||||||||||||   | ||||||| |  ||||||||||||||| |||||||||| |||| ||  || ||||  |||||||    
T  4135684 ccccacatccctagtagtagaacatcatttgaaaatggagtgtccagtagttgaatcatatctagcactcgagattcgactctaactggatggtcagcaa 4135783  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    |||||| ||||||||||||||||||| || |||| |||||||||||||| |||||| |||||||||| |||||||    
T  4135784 tgaacaggtctgtcttgtcaagcaaatgtgtaactttttcaacaatatccttgatatcctcactttcgttcctat 4135858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4330351 - 4330173
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttga---gtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcag 97  Q
    ||||||||| |||  ||||||||||||||||||||||||   ||||||| |||||||||||| |||| ||||||||| |  ||| | ||||||| |||||    
T  4330351 ccccacatctctaagagtagaacatcatttgattgttgatgagtgtctagaagttgaatcatctcttacactcgagatttaatttccaccggattatcag 4330252  T
Q  98 caatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctata 176  Q
    ||||||| |||||| |||| ||||| ||| || ||||||||||||||||||  |||||||| || ||||||||||||||    
T  4330251 caatgaataagtctatcttatcaagaaaaagtgtaacattttcaacaatattcttgataacttctctttcattcctata 4330173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 25567737 - 25567613
Alignment:
Q  49 agttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
    ||||||||||||| || ||||||||  || | ||| || |||| || |||||  | ||||| ||||||||| |||||||| |  |  |||||||||||||    
T  25567737 agttgaatcatattttccactcgaggttcaactcccactggattattagcaacaagcaagtgtgtcttgtctagcaaacgcacgattttttcaacaatat 25567638  T
Q  149 ctttgataacctcactttcattcct 173  Q
    | |||||| ||||||||||||||||    
T  25567637 ccttgatagcctcactttcattcct 25567613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5105012 - 5105200
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagt------gtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataat 94  Q
    ||||||||||||||||| ||||||||||||||||||||  |      |||||  ||||||||||||||||| |||||||| || | ||| ||||||| ||    
T  5105012 ccccacatccctagtaggagaacatcatttgattgttggatatcttggtctagcagttgaatcatatcttgaactcgagattcaactcccaccggattat 5105111  T
Q  95 cagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaaca 183  Q
     |||||| ||||| |||||||||||||||||| |  | ||||| | ||||||||| |||||||||||||||||||||||| | ||||||    
T  5105112 tagcaataaacaaatctgtcttgtcaagcaaatgcgttacattgttaacaatatccttgataacctcactttcattcctacataaaaca 5105200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5184092 - 5184265
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||| ||||||||||||| |||| |||||||| ||||  ||||||  | |||||||| |||| | |||||||| |||| ||| ||||||| ||| ||||    
T  5184092 ccccagatccctagtagtataacaccatttgatcgttggatgtctagcaattgaatcacatctcgtactcgagattcgactcccaccggattatccgcaa 5184191  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| ||||||||| | |||||| || |||||||||||||||| ||||||||  |||||||||||||||||    
T  5184192 tgaacaaatctgtcttgcctagcaaatgtgtaacattttcaacaatgtctttgattgcctcactttcattccta 5184265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5174728 - 5174555
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||||||||  |||||||||||||| ||||||||  ||||||  | |||||||||||||||||||||||| |||| ||| ||||||| ||||||||    
T  5174728 ccccacatccctatcagtagaacatcattagattgttggatgtctagcaattgaatcatatcttgcactcgagattcgagtcccaccggattatcagcaa 5174629  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
      |||||||||||||||||||  ||||||  ||| || ||||||||||  || ||  | |||||||||||||||    
T  5174628 caaacaagtctgtcttgtcaataaaacgtgaaactttgtcaacaatattcttaatcgcttcactttcattccta 5174555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5368322 - 5368143
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtct------ataagttgaatcatatcttgcactcgagaatcgattccgaccggataat 94  Q
    ||||||||||| ||||| ||||||||||||||||||||  | |||      || |||||||||||| ||||||||||||| || | ||| || |||| ||    
T  5368322 ccccacatccccagtagaagaacatcatttgattgttggatatcttgctccattagttgaatcataccttgcactcgagattcaactcccactggattat 5368223  T
Q  95 cagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| ||||| |||||||||||||||  |||  ||||||||||||||||||| | |||| ||| |||||||||||||    
T  5368222 cagcaataaacaattctgtcttgtcaagcttacgcgtaacattttcaacaatatcctggatagccttactttcattccta 5368143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 5423561 - 5423436
Alignment:
Q  49 agttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
    |||||||||||||||||||||||||| || | ||| || |||| || |||||| ||||| |||||||||||||||  |||  ||||||||||||||||||    
T  5423561 agttgaatcatatcttgcactcgagattcaactcccacaggattattagcaataaacaaatctgtcttgtcaagcttacgcgtaacattttcaacaatat 5423462  T
Q  149 ctttgataacctcactttcattccta 174  Q
    | || ||| |||||||||||||||||    
T  5423461 ccttaatagcctcactttcattccta 5423436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5093903 - 5093729
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| ||||| || |||||||||||||||||  ||||||  |||| ||| | |||||||||||||||| | | ||| || || | ||||||||    
T  5093903 ccccacatcccaagtagcagtacatcatttgattgttggatgtctaacagttcaataacatcttgcactcgagaaccaactcccacaggtttatcagcaa 5093804  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
    ||||||| |||||||| ||||||||| |  |||  |||||||||||||| |||||  ||| | ||||||||||||    
T  5093803 tgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatatccttgatggccttattttcattcctat 5093729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 5356815 - 5356935
Alignment:
Q  54 aatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttg 153  Q
    ||||||||||||||| ||||| || | ||| ||||||| || |||||  || |||||||||||||||||||||||| ||| ||||| ||||||||| |||    
T  5356815 aatcatatcttgcacacgagattcaactcccaccggattattagcaacaaataagtctgtcttgtcaagcaaacgtgtaatatttttaacaatatccttg 5356914  T
Q  154 ataacctcactttcattccta 174  Q
    ||| | |||||||||||||||    
T  5356915 atagcttcactttcattccta 5356935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5149102 - 5149276
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||| ||||||| ||| ||||||||||||| |||  ||||||  ||||||||||||||||| |||||||  || | |||||| |||| || |||||    
T  5149102 ccccacattcctagtaatagtacatcatttgatttttggatgtctagcagttgaatcatatcttgtactcgagtttcaactccgactggattatgagcaa 5149201  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 175  Q
     ||||||||| |||||||| |||||  |  |||| |||||||||||||   |||| | ||||||||| |||||||    
T  5149202 cgaacaagtcggtcttgtctagcaagtgagtaactttttcaacaatattcctgatgatctcactttcgttcctat 5149276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 5069265 - 5069390
Alignment:
Q  49 agttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
    |||||||||||||| ||||||||||| || | ||| || |||| || |||||| |||||||||| ||||||||||  |||  ||||||||||||||||||    
T  5069265 agttgaatcatatcctgcactcgagattcaactcccactggattattagcaataaacaagtctgccttgtcaagcttacgcgtaacattttcaacaatat 5069364  T
Q  149 ctttgataacctcactttcattccta 174  Q
    | |  ||||| |||||||||||||||    
T  5069365 cctctataacatcactttcattccta 5069390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5159641 - 5159814
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| ||||| || |||||||| || |||||  ||||||  |||| ||| | |||||||||||||||| | | ||| || |||| ||||||||    
T  5159641 ccccacatcccaagtagcagtacatcattggagtgttggatgtctagcagttcaataacatcttgcactcgagaaccaactcccacaggattatcagcaa 5159740  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| |||||||| ||||||||| |  |||  |||||||||||||| ||||| |||| | ||| |||||||    
T  5159741 tgaacaaatctgtcttatcaagcaaatgagtaattttttcaacaatatccttgatgaccttattttgattccta 5159814  T

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Target: chr6; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 174
Target Start/End: Original strand, 5075920 - 5076044
Alignment:
Q  50 gttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatc 149  Q
    |||||||||||||||  |||||||| |||| ||| || |||| ||||||||||||||| |||||||||||||||||||||  || |||||| || |||||    
T  5075920 gttgaatcatatcttctactcgagattcgactcccactggattatcagcaatgaacaaatctgtcttgtcaagcaaacgtgaaatattttccactatatc 5076019  T
Q  150 tttgataacctcactttcattccta 174  Q
     | |||  | |||||||||||||||    
T  5076020 gtcgattgcttcactttcattccta 5076044  T

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Target: chr6; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5341556 - 5341376
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||||| |||||||| |||||||||||||||  | || |  ||||||||||||||||||| ||| || || |  ||  | |||| |||| |||    
T  5341556 ccccacatccctaatagtagaatatcatttgattgttggatatcaagcagttgaatcatatcttgcaatcgggattcaacccccgctggattatcaacaa 5341457  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctatacaaaa 181  Q
      |||||||||||||||| |||||| ||  |||| ||||| || ||||| |||||| |||| |||||||||||||| ||||    
T  5341456 caaacaagtctgtcttgttaagcaagcgcgtaactttttcgacgatatccttgatagcctcgctttcattcctataaaaaa 5341376  T

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Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5431269 - 5431144
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||||||||| |||||||  ||| |||||||||||||  ||||||   ||||||| | |||||||| ||||||||| ||||| || || | ||||||||    
T  5431269 ccccacatcccaagtagtattacaccatttgattgttggatgtctagccgttgaataacatcttgcattcgagaatcaattcccactggcttatcagcaa 5431170  T
Q  101 tgaacaagtctgtcttgtcaagcaaa 126  Q
    |||||| |||| ||||||||||||||    
T  5431169 tgaacatgtctttcttgtcaagcaaa 5431144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5276567 - 5276394
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    |||||||||||||  |||||||||||||| ||||||||  ||||||  | | |||||||||||||||||||||| | || ||| || |||| ||||||||    
T  5276567 ccccacatccctaccagtagaacatcattagattgttggatgtctagcaatggaatcatatcttgcactcgagatttgagtcccactggattatcagcaa 5276468  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
      ||||||  |||||||||||  |||| |  ||| || ||||||||||  || ||  | |||||||||||||||    
T  5276467 caaacaagcatgtcttgtcaataaaacatgaaactttgtcaacaatattcttaatcgcttcactttcattccta 5276394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 5394818 - 5394732
Alignment:
Q  88 ggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
    ||||||| |||||| ||||||||||| |||||||||||||||  || |||||||||||| || |||||  | |||||||||||||||    
T  5394818 ggataattagcaataaacaagtctgttttgtcaagcaaacgtgaaatattttcaacaatgtcattgattgcgtcactttcattccta 5394732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 5444899 - 5444775
Alignment:
Q  50 gttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatc 149  Q
    ||||||||| ||||| ||||||||| || ||||| || |||| ||  ||||| ||||||||||| |||| ||||||| ||  ||  || ||||||||| |    
T  5444899 gttgaatcacatctttcactcgagattcaattcccactggattattcgcaataaacaagtctgttttgttaagcaaatgtgaaatgttgtcaacaatacc 5444800  T
Q  150 tttgataacctcactttcattccta 174  Q
    ||||| | |||||||||||||||||    
T  5444799 tttgacatcctcactttcattccta 5444775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 5692419 - 5692539
Alignment:
Q  55 atcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttga 154  Q
    |||||||||||||||||||  || | ||| || | || || |||||  ||||||||| ||||||| |||||||| | ||| ||||  ||||||||||| |    
T  5692419 atcatatcttgcactcgaggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatctttta 5692518  T
Q  155 taacctcactttcattcctat 175  Q
    || |||||||||| |||||||    
T  5692519 tagcctcactttcgttcctat 5692539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5134045 - 5134218
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttga------gtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataat 94  Q
    |||||||||||||| |||| ||||||||||||||||| |       ||||||  | ||||||||||||| |||  ||||| || | ||| || |||| ||    
T  5134045 ccccacatccctagaagtataacatcatttgattgttcaatatctttgtctagcaattgaatcatatctagcatacgagattcaactcccactggattat 5134144  T
Q  95 cagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattccta 174  Q
     |||||| ||||| ||| | ||||||||||||||  ||||||||||      |||||||||| ||||| |||||||||||    
T  5134145 tagcaataaacaaatctattttgtcaagcaaacgcgtaacattttc------atctttgatagcctcattttcattccta 5134218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5348273 - 5348236
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttg 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  5348273 ccccacatccctagtaggagaacatcatttgattgttg 5348236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 48015496 - 48015618
Alignment:
Q  52 tgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaatgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctt 151  Q
    |||||||||||| |||||| ||| || || || || | || || |||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||    
T  48015496 tgaatcatatctcgcactcaagattcaatccccactgaattattagcaataaacaagtctgtcttgtcaagcaatcgtgtaatattttcaacaatatctt 48015595  T
Q  152 tgataacctcactttcattccta 174  Q
    | |||||||| ||||||||||||    
T  48015596 taataacctcgctttcattccta 48015618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 10805 - 10952
Alignment:
Q  1 ccccacatccctagtagtagaacatcatttgattgttgagtgtctataagttgaatcatatcttgcactcgagaatcgattccgaccggataatcagcaa 100  Q
    ||||| ||||||||||| ||||||||||||||||||||| | | ||  |   ||||| | |  | ||||||||| | || ||| ||||||| |||| |||    
T  10805 ccccaaatccctagtagcagaacatcatttgattgttgaatttttagcaacggaatcgttttgtccactcgagatttgactcccaccggattatcaacaa 10904  T
Q  101 tgaacaagtctgtcttgtcaagcaaacgtataacattttcaacaatat 148  Q
     ||| |||||||||||||||||||||    |||| |||||||||||||    
T  10905 cgaataagtctgtcttgtcaagcaaaatagtaactttttcaacaatat 10952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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