View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16091_low_16 (Length: 556)

Name: NF16091_low_16
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16091_low_16
NF16091_low_16
[»] chr1 (5 HSPs)
chr1 (156-412)||(15593484-15593740)
chr1 (27-120)||(15593742-15593834)
chr1 (420-476)||(15593324-15593380)
chr1 (497-540)||(15593256-15593299)
chr1 (232-309)||(861889-861966)
[»] chr7 (3 HSPs)
chr7 (228-270)||(42720925-42720967)
chr7 (239-282)||(9483377-9483420)
chr7 (235-297)||(31924415-31924477)
[»] chr8 (2 HSPs)
chr8 (233-293)||(32145224-32145284)
chr8 (228-272)||(25831682-25831726)
[»] chr4 (2 HSPs)
chr4 (232-270)||(5096131-5096169)
chr4 (231-296)||(43093534-43093599)
[»] chr2 (1 HSPs)
chr2 (232-270)||(12940970-12941008)
[»] chr3 (3 HSPs)
chr3 (239-308)||(26656716-26656785)
chr3 (237-318)||(51733135-51733216)
chr3 (254-318)||(49636813-49636877)
[»] chr6 (1 HSPs)
chr6 (228-304)||(10038445-10038520)
[»] chr5 (1 HSPs)
chr5 (246-298)||(9895147-9895199)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 156 - 412
Target Start/End: Complemental strand, 15593740 - 15593484
Alignment:
Q  156 catgatgaacttttgaatagagtac-atgtaacaggactggttttgctctataaagcttgaacttgaacacctacatgacattgacacgttgacaccact 254  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||| ||||  | |||||||||||||||| |||||||||||    
T  15593740 catgatgaacttttgaatacagtactatgtaataggactggttttgatctataaagcttgaacgtgaatgcttacatgacattgacacattgacaccact 15593641  T
Q  255 aataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctacataggtcttgattaatcaactttcctatcaatgcggc 354  Q
    ||||||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||     
T  15593640 aataatttgaaaaaatagattaatcgaacatagtcacatgcgtttgtgtcgtgtcagtgctacataggtcttgattcatcaactttcctatcaatgtggg 15593541  T
Q  355 agactataagtttccaattcaagcaactacaaagcctgtaaatcccaatatactagca 412  Q
    |||||||||| |||||||||||| ||||||||||||||||||| ||||  ||||||||    
T  15593540 agactataag-ttccaattcaagtaactacaaagcctgtaaattccaacttactagca 15593484  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 15593834 - 15593742
Alignment:
Q  27 tgcttccaaattaagatccctatcaggctcttgtgctttagttaataatcnnnnnnnggtttatttgagctttctttgcaccttgtctcccaaa 120  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||       |||||||||||||||||| || ||||||||| |||||    
T  15593834 tgcttccaaatcaagatccctatcaggcacttgtgctttagttaataatc-gtttttggtttatttgagctttctatggaccttgtcttccaaa 15593742  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 476
Target Start/End: Complemental strand, 15593380 - 15593324
Alignment:
Q  420 gagcaagaatgaagtgttgtcacttgccatcactcatcctggtttcctctattaggg 476  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  15593380 gagcaagaatgaagtgttgtcacttgcaatcactcaccgtggtttcctctatcaggg 15593324  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 540
Target Start/End: Complemental strand, 15593299 - 15593256
Alignment:
Q  497 gaacaagccaccacaccatcctcatcagttccattccacttcat 540  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  15593299 gaacaagccaccacaccatcctcgttagttccattccacttcat 15593256  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 861966 - 861889
Alignment:
Q  232 gacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtc 309  Q
    ||||| ||||||||||||| | |||||||||||||||||   | ||||||| |||||||| |||| | | ||||||||    
T  861966 gacatagacacgttgacactagtaataatttgaaaaaatgacaaaattgaaagtagtcacgtgtgatggggtcgtgtc 861889  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 42720967 - 42720925
Alignment:
Q  228 acatgacattgacacgttgacaccactaataatttgaaaaaat 270  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  42720967 acatgacactgacacgttgacaccgctaataatttgaaaaaat 42720925  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 9483377 - 9483420
Alignment:
Q  239 acacgttgacaccactaataatttgaaaaaatagaataattgaa 282  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||    
T  9483377 acacattgacaccaataataatttgagaaaatagaataattgaa 9483420  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 31924415 - 31924477
Alignment:
Q  235 attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgt 297  Q
    |||||||||||||||||  ||||||||| | ||||||||| |||||||  || ||||||||||    
T  31924415 attgacacgttgacaccgataataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 32145224 - 32145284
Alignment:
Q  233 acattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacat 293  Q
    |||||||||| || |||||| ||||||||||| ||||| |||||||| |||||| ||||||    
T  32145224 acattgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacat 32145284  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 25831726 - 25831682
Alignment:
Q  228 acatgacattgacacgttgacaccactaataatttgaaaaaatag 272  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||    
T  25831726 acataacattgacacgtagacaccactaataatttaagaaaatag 25831682  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 5096169 - 5096131
Alignment:
Q  232 gacattgacacgttgacaccactaataatttgaaaaaat 270  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  5096169 gacattgacacgtcgacaccgctaataatttgaaaaaat 5096131  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 43093599 - 43093534
Alignment:
Q  231 tgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtg 296  Q
    ||||| ||||||||  |||||  ||||||||||||||||| | ||||||||| ||| |||||||||    
T  43093599 tgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtg 43093534  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 12941008 - 12940970
Alignment:
Q  232 gacattgacacgttgacaccactaataatttgaaaaaat 270  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  12941008 gacactgacacgttgacacaactaataatttgaaaaaat 12940970  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 26656785 - 26656716
Alignment:
Q  239 acacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgt 308  Q
    ||||||||||| || || ||||||| ||||||| ||||||| || |||  ||||||||||||||| ||||    
T  26656785 acacgttgacaacagtagtaatttggaaaaataaaataattcaatgtaaccacatgtgtttgtgttgtgt 26656716  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 51733135 - 51733216
Alignment:
Q  237 tgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 318  Q
    ||||| |||||||||  |||||| |||| ||||||||||||||||||||   || ||||||  |||| ||||| ||||||||    
T  51733135 tgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca 51733216  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 49636877 - 49636813
Alignment:
Q  254 taataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 318  Q
    ||||||||||| |||||  | |||||||| ||| ||||||| | | |||||||||||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgtcgtgtcagtgctaca 49636813  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 10038520 - 10038445
Alignment:
Q  228 acatgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtc 304  Q
    |||||||||||||||||| |||||  |||||  | || |||||||||||||||||  || ||||||||||| |||||    
T  10038520 acatgacattgacacgttaacaccggtaatacct-gagaaaatagaataattgaatataatcacatgtgttggtgtc 10038445  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 9895147 - 9895199
Alignment:
Q  246 gacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtt 298  Q
    ||||||| ||||||||||| |||||| | || ||||||||| |||||||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgtt 9895199  T

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