View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_160 (Length: 216)
Name: NF16091_low_160
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_160 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 21476806 - 21476628
Alignment:
| Q |
16 |
atgaacatatggtgtataattaattatgctatgttcatcacaatgaatggttacggtggatcaaatgcttctttcatgtgtttgaattacaataaggagt |
115 |
Q |
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| T |
21476806 |
atgaacatatggtgtataattaattatgctatgttcatcacaatgaatggttacggtggatcaaatgcttctttcatgtgtttgaattccaataaggagt |
21476707 |
T |
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| Q |
116 |
aggtaacccttcacaaaattgattattgcaagtttataggtaaggctggctagttaatggaactcaagattaattgggtaagg |
198 |
Q |
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| T |
21476706 |
aggtaacccttcacaaaattgattattgcaaatttataggtaa----ggctagttaatggaactcaagattaattgggtaagg |
21476628 |
T |
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