View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_162 (Length: 215)
Name: NF16091_low_162
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_162 |
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| [»] scaffold0239 (1 HSPs) |
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Alignment Details
Target: scaffold0239 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0239
Description:
Target: scaffold0239; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 931 - 750
Alignment:
| Q |
17 |
aaaatactccaaaccatgtggctgaaaagatttgttatggccaagcctggaaaaaatatacatgggaacatatagcct-tagttactgctaacaatttga |
115 |
Q |
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| T |
931 |
aaaatactccaaaccatgtggctgaaaagacttgttatggccaagcctggaaaaaatatacatgggaacatatagcctatagttaccgctaacaatttga |
832 |
T |
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| Q |
116 |
cttttatttaagaactaaaactaccaacatcttagtaatagtataacaatgttgcttattattccttgtccattgtagaaga |
197 |
Q |
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| T |
831 |
ctcttatttaagaatcatacctaccaacatcttagtaatagtataacaatgttgcttattattccttgtccatggtagaaga |
750 |
T |
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