View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_166 (Length: 210)
Name: NF16091_low_166
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_166 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 20115766 - 20115938
Alignment:
| Q |
19 |
aatcattcaaaccgatggaatagagaaaacgttgctgcacttctattattcagactagccaagtaattcaataagtaagaaaatcttatctaatctttta |
118 |
Q |
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| T |
20115766 |
aatcattcaaactgatggaatagagaaaacgttgctgcacttctattattcagactagccaagtaattcaataagtaagaaaatcttatctaatctttta |
20115865 |
T |
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| Q |
119 |
aacaaagaggcaaatggccatcttaattttaaccgtccaatcaaaacatttgcttaataacaaagtgtaccac |
191 |
Q |
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| T |
20115866 |
aacaaagaggcaaatggccatcttaattttaaccgtccaatcaaaacatttgcttaataacaaagtgtaccac |
20115938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 20096930 - 20097044
Alignment:
| Q |
19 |
aatcattcaaaccgatggaatagagaaaacgttgctgcacttctattattcagactagccaagtaattcaataagtaagaaaatcttatctaatctttta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||| |
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| T |
20096930 |
aatcattcaaaccgatggaatagagaaaacgttgctgcacttatattattcatactagccaagtaatttaataagtaagaaaatctaatctaatccttta |
20097029 |
T |
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| Q |
119 |
aacaaagaggcaaat |
133 |
Q |
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| T |
20097030 |
aacaaagaggcaaat |
20097044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 36 - 191
Target Start/End: Original strand, 20071193 - 20071349
Alignment:
| Q |
36 |
gaatagagaaaacgttgctgcacttctattattcagactagccaagtaattcaataagtaagaaaatcttatctaatcttttaaacaaagaggcaaatg- |
134 |
Q |
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| T |
20071193 |
gaatagagaaaacggtgctacacttatattattcatactagccaagtaatttaataagtaagaaaatctaatttaatcttttaagcaaagaggcaaacga |
20071292 |
T |
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| Q |
135 |
-gccatcttaattttaaccgtccaatcaaaacatttgcttaataacaaagtgtaccac |
191 |
Q |
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| T |
20071293 |
tgcc-tcttaattttaacggtccaatcaacacatttgcttaatcacaaaatgtaccac |
20071349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 20067105 - 20067274
Alignment:
| Q |
27 |
aaaccgatggaatagagaaaacgttgctgcacttctattattcagactagccaagtaattca----ataagtaagaaaatcttatctaatcttttaaaca |
122 |
Q |
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| T |
20067105 |
aaacggattgaatagaaaaaacggtgctgcacttatattattcatactagccaagtaatttatttaataagtaagaaaatctaatttcatcttttaagca |
20067204 |
T |
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| Q |
123 |
aagaggcaaatg--gccatcttaattttaaccgtccaatcaaaacatttgcttaataacaaagtgtaccac |
191 |
Q |
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| T |
20067205 |
aagaggcaaacgatgcc-tcttaattttaacggtccaatcaacacatttgcttaataaaaaaatgtaccac |
20067274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 20084508 - 20084621
Alignment:
| Q |
19 |
aatcattcaaaccgatggaatagagaaaacgttgctgcacttctattattcagactagccaagtaattcaataagtaagaaaatcttatctaatctttta |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||| || || ||||||||| |
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| T |
20084508 |
aatcattcaaactgatggaatagagaaaacgttgctgcacttatattattcatactagcaaagtaatttaataagtaagaaaacctaattaaatctttta |
20084607 |
T |
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| Q |
119 |
aacaaagaggcaaa |
132 |
Q |
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| T |
20084608 |
ggcaaagaggcaaa |
20084621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 20078251 - 20078368
Alignment:
| Q |
74 |
tagccaagtaattcaataagtaagaaaatcttatctaatcttttaaacaaagaggcaaatggc-catcttaattttaaccgtccaatcaaaacatttgct |
172 |
Q |
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||||||||||||| | |||||||||||||| || ||||||||||| |||||||||||| | | | |||||||||| || |||||||||| ||||||||| |
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| T |
20078251 |
tagccaagtaattttaaaagtaagaaaatctaatttaatcttttaagcaaagaggcaaacgacgcctcttaatttt-acggtccaatcaacacatttgct |
20078349 |
T |
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| Q |
173 |
taataacaaagtgtaccac |
191 |
Q |
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| T |
20078350 |
taatcacataatgtaccac |
20078368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 20097060 - 20097123
Alignment:
| Q |
124 |
agaggcaaatggccatcttaattttaaccgtccaatcaaaacatttgcttaataacaaagtgta |
187 |
Q |
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| T |
20097060 |
agaggcaaacggctttcttaattttaacgctccaatttaaacatttgcttaataacaaagtgta |
20097123 |
T |
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