View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16091_low_17 (Length: 553)
Name: NF16091_low_17
Description: NF16091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16091_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 544
Target Start/End: Original strand, 27610645 - 27611164
Alignment:
| Q |
17 |
aatacagaacaagacacataatatagtnnnnnnngaaccaattaagaagcaaaaagataaataagaggtaatttagccttattactgaagtacctagtag |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
27610645 |
aatacagaacaagacacataatatagtaaaaaaagaaccaattaagaagcaaaaagataaataagaggtaatttagctttattgctgaagtacctagtag |
27610744 |
T |
|
| Q |
117 |
tgtaagagttgcaaaatttaggggtagtggtagtagaagagtgcttggaagaagagagtgagttttcagaaaccatatttgttttttcttcctttctctt |
216 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27610745 |
tgtaagagttgcaaaatttaggagtagtggtagtagaagagtgcttggaagaagagagtgagttttcagaaaccatatttgttttttcttccttt----- |
27610839 |
T |
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| Q |
217 |
tctatccgttagaaagagtgagagaaaaagaagctcctcctccttgtgtctgaggtgtgtctgcatgtgtatgttaaatgtttcagtaacagcaacacaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27610840 |
-ctatccgttagaaagagtgagagaaaaagaagctcctcctccttgtgtctgaggtgtgtctgcatgtgtatgttaaatgtttcagtaaaagcaacacaa |
27610938 |
T |
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| Q |
317 |
actgtagcctatagctatggatgattacactatcatccaataatgtgtacggttgattgcaggttcaagaatattttgaaataaacaccctaaaagacgc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27610939 |
actgtagcctatagctatggatgattacactatcatccaataatgtgtacggttgattgcaggttcaagaatattttgaaataaacaccctaaaagacgc |
27611038 |
T |
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| Q |
417 |
tcaacacatagcaatcaattattcacaaatgccatatacactaacacaactttttcttttcattttcataacatggcaaggcctgtgtgtgtgtagtctt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27611039 |
tcaacacatagcaatcaattattcacaaatgccatatacactaacacaactttttcttttcattttcataacatggcaaggcc--tgtgtgtgtagtctt |
27611136 |
T |
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| Q |
517 |
cttttgctttttggctgcctttgcttct |
544 |
Q |
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|||||||||||||||||| |||| |||| |
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| T |
27611137 |
cttttgctttttggctgcttttgtttct |
27611164 |
T |
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